IMGT Repertoire (IG and TR)

Atlantic salmon (Salmo salar) IGH locus on chromosome 6 (locus A - Salsal ssa06)

The orientation of the Atlantic salmon (Salmo salar) IGH locus on the chromosome 6 (locus A - Salsal ssa06) is reverse (REV).

Legend:
Colors are according to IMGT color menu for genes.
The boxes representing the genes are not to scale. Exons are not shown.
A double slash // indicates a gap in genome assembly. Distances in bp (base pair) or in kb (kilobase) associated with a double slash are taken into account in the length of the lines and included in the numbers displayed at the right end of the lines.
A dotted line ... indicates the distance in kb (kilobase) between the locus and its bornes (5' borne and the most 5' gene in the locus and/or 3' borne and the most 3' gene in the locus) on the top and bottom lines, respectively. These distances are not represented at scale and are not included in the numbers displayed at the right ends of these two lines.

IGH gene names are according to IMGT nomenclature [2].
Single arrows show genes whose polarity is opposite to that of the D-J-C-CLUSTER comprising IGHD (D1 to D9)-IGHJ (J1 to J5)-IGHM-IGHD.

Gene names of IGHV pseudogenes with frameshift(s) in the V-REGION are not displayed lack of space in the locus map at the IMGT standardized scale (line = 200 kb). For all gene names, see Zoom x2.

Zoom for IGH V-D-J-C-CLUSTER

Atlantic salmon (Salmo salar) IGH locus on chromosome 3 (locus B - Salsal ssa03)

The orientation of the Atlantic salmon (Salmo salar) IGH locus on the chromosome 3 (locus B - Salsal ssa03) is forward (FWD).

Legend:
Colors are according to IMGT color menu for genes.
The boxes representing the genes are not to scale. Exons are not shown.
A double slash // indicates a gap in genome assembly. Distances in bp (base pair) or in kb (kilobase) associated with a double slash are taken into account in the length of the lines and included in the numbers displayed at the right end of the lines.
A dotted line ... indicates the distance in kb (kilobase) between the locus and its bornes (5' borne and the most 5' gene in the locus and/or 3' borne and the most 3' gene in the locus) on the top and bottom lines, respectively. These distances are not represented at scale and are not included in the numbers displayed at the right ends of these two lines.

IGH gene names are according to IMGT nomenclature [2].
Single arrows show genes whose polarity is opposite to that of the D-J-C-CLUSTER comprising IGHD (D1D to D6D)-IGHJ (J1D to J5D)-IGHMD-IGHDD.

Gene names of IGHV pseudogenes with frameshift(s) in the V-REGION are not displayed lack of space in the locus map at the IMGT standardized scale (line = 200 kb). For all gene names, see Zoom x2.

Zoom for IGH V-D-J-C-CLUSTER

More information:

• Gene table: Atlantic salmon (Salmo salar) IGHV
• Gene table: Atlantic salmon (Salmo salar) IGHD
• Gene table: Atlantic salmon (Salmo salar) IGHJ
• Gene table: Atlantic salmon (Salmo salar) IGHC
• Potential germline repertoire: Atlantic salmon (Salmo salar) IGHV, IGHD and IGHJ genes on chromosome 3 and 6

See also:

• Genomic orientation (IMGT Index)
• Taxonomy: Euteleostei