IMGT MHC entry from gene to protein for Oncorhynchus mykiss MH1-C

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

MH1-C Gene exon/intron organization
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Corresponding protein database accession numbers

Allele names IMGT/LIGM-DB UniProt Protein isoform
Accession numbers Sequence lengths (nt) Accession numbers Sequence lengths (AA)
Oncmyk MH1-C*01 AB162343 1071 Q5FBT8 357
AY523659 Q5FBT8 357
HE603153 1038 G4VUX0 346
Oncmyk MH1-C*02 DQ091773 1002 Q2QF24 334
Oncmyk MH1-C*03 AY523660 1071 Q1XD50 357
Oncmyk MH1-C*04 DQ091775 990 Q2QF22 330
Oncmyk MH1-C*05 AY523661 1077 Q1XD49 359
Oncmyk MH1-C*06 DQ091774 990 Q2QF23 330
Oncmyk MH1-C*07 AY523662 1077 Q1XD48 359
Oncmyk MH1-C*08 AY523663 1062 Q1XD47 354
Oncmyk MH1-C*09 AY523664 849 Q1XD46 283
Oncmyk MH1-C*10 AY523665 1080 Q1XD45 360
Oncmyk MH1-C*11 DQ926704 549 Q005W9 183
Oncmyk MH1-C*12 EU036640 531 B1NQV0 177
Oncmyk MH1-C*13 AY071854 1035 Q8WM52 345
Oncmyk MH1-C*14 HE603156 1035 G4VUX3 345
HE603161 G4VUX8 345
HE603158 G4VUX5 345
HE603160 G4VUX7 345
Oncmyk MH1-C*15 HE603154 1032 G4VUX1 344
HE603155 G4VUX2 344
HE603159 G4VUX6 344
Oncmyk MH1-C*16 HE603157 1035 G4VUX4 345

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

Oncmyk MH1-C*01: AB162343(g)

Coding region structure

coding region structure fish MH1-C

Nucleotide sequence

1        atgaagggtt ttatgcttat gttcatggga ataggccacc tttatgaagc atttgctgtg

61       actcattccc tgacgcattt ctacaccgca tcttctgaag tttataactt cccagagttt

121      atggttgtgg ggatggtgga tggtgttcag atggttcact atgacagcaa cagccagaaa

181      gcggtgcccg aacaggactg gatgaagcag acagacgcag agttctggga gaaggagaga

241      gagaatttct tttattccca gcagtcattc aaagctgaag tcgctactct aaagcagcat

301      tttaaccaaa gtggaggagt ccacattctc cagtacatgt atggctgctc acgggatgat

361      gagactgaac agacagaggg gtttggacag ctgggttata atggggagaa cttccttgag

421      tacgacatga agacattaac ttggaaatct cgtaaacagc aagctaattt catgcaggat

481      gagtggaaca gtgacatcag tagactgggc ttctggaaga tctacttctc ccagacctgc

541      attgagtgtc tgaagaagca ggtggacaat gggaagcgca ctctgaggag gacagtccct

601      ccctcagtgt ctctgctcca gaagaccccc tcctctccag tgacctgcca cgctacaggt

661      ttctacccca gtggagtcat ggtgtcctgg cagaaagacg gacaagatca ccatgaagat

721      gtggagcatg gagagattct cttcaacgat gatggaacct tccagaaaag cacccacctc

781      acagtgatgc acgaggagag gaagaacaaa aattatcagt gtgtggttca ggtcactggt

841      atcaaggagg acttcatcaa ggttctgact gagtctgaga tccagaccaa ctggaaggac

901      ccagccccca acattatccc catcattgga gggatggtag cccccttcct ggtcgttgtt

961      gttgttgggg ttgttgtcat ttggaagaag aagaagagta agaaagggtt tgttccagcc

1021     agcacttctg acactgactc tgacaactct gggaaaggtc tcctgaagat ttga
Nucleotide sequence in FASTA format (without gaps) Oncmyk MH1-C*01

Amino acid sequence

1        MKGFMLMFMG IGHLYEAFAV THSLTHFYTA SSEVYNFPEF MVVGMVDGVQ MVHYDSNSQK

61       AVPEQDWMKQ TDAEFWEKER ENFFYSQQSF KAEVATLKQH FNQSGGVHIL QYMYGCSRDD

121      ETEQTEGFGQ LGYNGENFLE YDMKTLTWKS RKQQANFMQD EWNSDISRLG FWKIYFSQTC

181      IECLKKQVDN GKRTLRRTVP PSVSLLQKTP SSPVTCHATG FYPSGVMVSW QKDGQDHHED

241      VEHGEILFND DGTFQKSTHL TVMHEERKNK NYQCVVQVTG IKEDFIKVLT ESEIQTNWKD

301      PAPNIIPIIG GMVAPFLVVV VVGVVVIWKK KKSKKGFVPA STSDTDSDNS GKGLLKI*
Amino acid sequence in FASTA format (without gap) Oncmyk MH1-C*01

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