IMGT Repertoire (MH)

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IMGT MHC entry from gene to protein for Oncorhynchus mykiss MH2-DA

IMGT gene name and definition

IMGT gene name: Oncorhynchus mykiss MH2-DA
IMGT gene definition: major histocompatibility 2 alpha

Chromosomal localization

Locus name: Oncorhynchus mykiss MHC
Chromosome: 17
Chromosomal localization: 17p

Gene exon/intron organization

Corresponding protein database accession numbers

Allele names	IMGT/LIGM-DB		UniProt		Protein isoform
Allele names	Accession numbers	Sequence lengths (nt)	Accession numbers	Sequence lengths (AA)
Oncmyk MH2-DA*01	AJ251433	720	Q9MX25	240	A
	FR688134	657	E0WN08	219
	FJ597489	171	B9VRU4	57	A
Oncmyk MH2-DA*02	AJ251432	705	Q9MX26	235	B
Oncmyk MH2-DA*03	AJ251431	657	Q9MX27	219
Oncmyk MH2-DA*04	FJ597490	171	Q6W896	57
Oncmyk MH2-DA*05	AY305399	217	Q6W895	72
Oncmyk MH2-DA*06	FR688130	657	E0WN04	219
Oncmyk MH2-DA*04	AY305398	217	Q6W896	72
Oncmyk MH2-DA*07	FR688131	657	E0WN05	219
	FR688133		E0WN07	219
	FR688136		E0WN10	219
Oncmyk MH2-DA*08	FR688129	657	E0WN03	219
Oncmyk MH2-DA*09	FR688137	657	E0WN11	219
Oncmyk MH2-DA*10	FR688138	657	E0WN12	219
Oncmyk MH2-DA*10	FJ597492	657	B9VRU7	57
Oncmyk MH2-DA*11	FR688132	657	E0WN06	219
	FR688135	657	E0WN09	219
	FJ597504	171	B9VRV9	57
Oncmyk MH2-DA*12	FJ597491	657	E0WN09	219
Oncmyk MH2-DA*13	FJ597493	171	B9VRU8	57
Oncmyk MH2-DA*14	FJ597494	171	B9VRU9	57
Oncmyk MH2-DA*15	FJ597495	171	B9VRV0	57
Oncmyk MH2-DA*16	FJ597496	171	B9VRV1	57
Oncmyk MH2-DA*17	FJ597497	171	B9VRV2	57
Oncmyk MH2-DA*18	FJ597498	171	B9VRV3	57
Oncmyk MH2-DA*19	FJ597499	171	B9VRV4	57
Oncmyk MH2-DA*20	FJ597500	171	B9VRV5	57
Oncmyk MH2-DA*21	FJ597501	171	B9VRV6	57
Oncmyk MH2-DA*22	FJ597502	171	B9VRV7	57
Oncmyk MH2-DA*23	FJ597503	171	B9VRV8	57
Oncmyk MH2-DA*24	FJ597505	171	B9VRW0	57
Oncmyk MH2-DA*25	FJ597506	171	B9VRW1	57

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

Oncmyk MH2-DA*01: AJ251433(c)

Coding region structure

Nucleotide sequence

1        atgaagacct ctatgattgt cctcatcctc tgctgtcagg tgtatgcaga agacaaagtt

61       ctgcatattg atttagctat tactggatgc agtgattcag atggagtgga tatgtatgga

121      ctggatggtg aagagttgtg gtacgcagac ttcaacaaaa aggagggagt gatggctctg

181      cctccgtttg cagatcagat gaccttccct ggattttatg aacaggctgt aggtaatctg

241      gggatatgca aagcaaacct ggccgtagct ataaaagctt ccaagaaccc accagaggca

301      atagcccctc ctcacagcag catctacccc agggatgatg tggaactggg ggtggagaac

361      accctcatct gccacgtcag tgcgttccac cctgcacctg tcagagtcag gtggaccagg

421      aacaatcaga atgtgaccga gggagtgcgt ctcagcaccc cctaccccaa cactgatttc

481      accctcaacc agttctccag tctgaccttc accccagagg agggagacat ctatggctgt

541      actgtggagc acaaggccct tactgagccc ctgacacgga tctgggaacc tgaggtgagc

601      cagcccagtg tggctcctgc tgtgttctgt ggtgtgggtc tgactctggg gctgctggga

661      gtggctaccg gaacattctt cccatatagg tcactacttt ggctaagagc cctttgctct

721      tag

Nucleotide sequence in FASTA format (without gaps) Oncmyk MH2-DA*01

Amino acid sequence

1        MKTSMIVLIL CCQVYAEDKV LHIDLAITGC SDSDGVDMYG LDGEELWYAD FNKKEGVMAL

61       PPFADQMTFP GFYEQAVGNL GICKANLAVA IKASKNPPEA IAPPHSSIYP RDDVELGVEN

121      TLICHVSAFH PAPVRVRWTR NNQNVTEGVR LSTPYPNTDF TLNQFSSLTF TPEEGDIYGC

181      TVEHKALTEP LTRIWEPEVS QPSVAPAVFC GVGLTLGLLG VATGTFFPYR SLLWLRALCS

241      *

Amino acid sequence in FASTA format (without gap) Oncmyk MH2-DA*01

Legend:

Colors are according to IMGT Color menu for regions and domains
Nucleotide and amino acid letters (in bold) in purple, green or blue are according to IMGT Color menu for splicing types.

IMGT links

IMGT Repertoire

Correspondence between nomenclatures (MHC): Teleostei
Correspondence between nomenclatures: fish/MHC/teleostei_MHCnom.html
Chromosomal localization: Vertebrate species (table)
Protein displays (MHC): G-DOMAIN, C-LIKE-DOMAIN
Alignment of alleles:
Strand and loop lengths (MHC): G-DOMAIN, C-LIKE-DOMAIN
Collier de perles (MHC): G-DOMAIN, C-LIKE-DOMAIN

IMGT databases

IMGT/3Dstructure-DB:

External links

Genome databases

Entrez Gene:

Sequence databases

EMBL: many entries (tables above)
GenBank: many entries (tables above)
DDBJ: many entries (tables above)
Swiss-Prot: many entries (tables above)
TrEMBL: many entries (tables above)
NCBI: many entries (tables above)

Structure databases

PDB: 1HDM