IMGT Repertoire (RPI)
IMGT RPI entry from gene to protein for Homo sapiens CD1E
IMGT gene name and definition
- IMGT gene name: Homo sapiens CD1E
- IMGT gene definition: CD1E antigen, e polypeptide
Chromosomal localization
- Chromosome: 1
- Chromosomal localization: 1q22-q23
Gene exon/intron organization
Number of alleles: 6
IMGT reference alleles
| Allele name | Gene functionality | IMGT reference sequences | ||
|---|---|---|---|---|
| Clone names | Accession numbers | Molecule type | ||
| CD1E*01 | F | AL121986 | gDNA | |
| CD1E*02 | F | AF142669 | gDNA (1) | |
| CD1E*03 | F | AH010757 | gDNA (2) | |
| CD1E*04 | F | vAH010758 | gDNA (2) | |
| CD1E*05 | F | AJ251334 | gDNA (3) | |
| CD1E*06 | F | AJ251335 | gDNA (3) | |
IMGT reference sequences (in FASTA format) for the allele(s): CD1E*01 to CD1E*06
- Nucleotide sequence in FASTA format with gaps according to the IMGT unique numbering
- Amino acid sequence in FASTA format with gaps according to the IMGT unique numbering
- Nucleotide sequence in FASTA format without gaps
- Amino acid sequence in FASTA format without gaps
Other sequences from the literature
| Allele name | Gene functionality | IMGT reference sequences | ||
|---|---|---|---|---|
| Clone names | Accession numbers | Molecule type | ||
| CD1E*01 | F | D-PLL-lambda 2001 | X14975 | gDNA |
Corresponding protein database accession numbers
| Allele name | Accession numbers | Number of amino acids | Protein isoform | |
|---|---|---|---|---|
| Nucleotide databases | Protein databases | |||
| CD1E*01 | AL121986 | Sw: P15812 | 322 aa | |
| X14975 | 322 aa | |||
| NM_030893 | NP_112155 | 322 aa | ||
| CD1E*02 | AF142669 (1) | 91 aa | ||
| CD1E*03 | AH010757 (2) | 178 aa | ||
| CD1E*04 | AH010757 (2) | 178 aa | ||
| CD1E*05 | AJ251334 (3) | 98 aa | ||
| CD1E*06 | AJ251335 (3) | 90 aa | ||
IMGT notes:
- (1) partial cds, only EX2
- (2) partial cds, only EX2 and EX3
- (3) partial cds, only EX3
Genomic sequence
Position: 100404 ... 103010 (from ATG to stop codon included).Coding region sequence
The coding region (CODING-REGION)
sequence starts from INIT-CODON
(or its encoded amino acid) to STOP-CODON
(not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is
built by artificial exon joining from genomic DNA (g) sequences.
The amino acid sequence is the translation of the nucleotide sequence.
CD1E*01: AL121986(g)
Nucleotide sequence
1 atgctgctcc tgttcctcct cttcgagggt ctctgctgtc ctggggaaaa tacagcagca 61 gcagaggagc agctgtcctt ccgcatgctc caaacttcct cctttgccaa ccacagctgg 121 gcacacagtg agggctcagg atggctgggt gacctgcaga ctcatggctg ggacactgtc 181 ttgggcacca tccgctttct gaagccctgg tcccatggaa acttcagcaa gcaggagctg 241 aaaaacttac agtcactgtt ccagttatac ttccatagtt ttatccagat agtgcaagct 301 tctgctggtc aatttcagct tgaatacccc ttcgagatcc agatattagc tggctgtaga 361 atgaatgccc cacaaatctt cttaaatatg gcatatcaag ggtcagattt cctgagtttc 421 caaggaattt cctgggagcc atctccagga gcagggatcc gggcccagaa catctgtaaa 481 gtgctcaatc gctacctaga tattaaggaa atactgcaaa gccttcttgg tcacacctgc 541 cctcgatttc tagcggggct catggaagca ggggagtcag aactgaaacg gaaagtgaag 601 ccagaggcct ggctgtcctg tggccccagt cctggccctg gccgtctgca gcttgtgtgc 661 catgtctcag gattctaccc aaagcccgtg tgggtgatgt ggatgcgggg tgagcaggag 721 cagcggggca ctcagcgagg ggacgtcctg cctaatgctg acgagacatg gtatctccga 781 gcaaccctgg atgtggcggc tggggaggca gctggcctgt cctgtcgggt gaaacacagc 841 agtctagggg gccatgatct aatcatccat tggggtggat attccatctt tctcatcctg 901 atctgtttga ctgtgatagt taccctggtc atattggttg tagttgactc acggttaaaa 961 aaacagaggt ga
Nucleotide sequence in FASTA format (without gaps)
CD1E*01
Amino acid sequence
1 MLLLFLLFEG LCCPGENTAA AEEQLSFRML QTSSFANHSW AHSEGSGWLG DLQTHGWDTV 61 LGTIRFLKPW SHGNFSKQEL KNLQSLFQLY FHSFIQIVQA SAGQFQLEYP FEIQILAGCR 121 MNAPQIFLNM AYQGSDFLSF QGISWEPSPG AGIRAQNICK VLNRYLDIKE ILQSLLGHTC 181 PRFLAGLMEA GESELKRKVK PEAWLSCGPS PGPGRLQLVC HVSGFYPKPV WVMWMRGEQE 241 QRGTQRGDVL PNADETWYLR ATLDVAAGEA AGLSCRVKHS SLGGHDLIIH WGGYSIFLIL 301 ICLTVIVTLV ILVVVDSRLK KQR*
Amino acid sequence in FASTA format (without gap)
CD1E*01
Legend:
- Colors are according to IMGT Color menu for regions and domains
- Nucleotide and amino acid letters (in bold) in purple, green or blue are according to IMGT Color menu for splicing types.
IMGT links
IMGT Repertoire
- Chromosomal localization:
- Alignment of alleles:
- Protein displays (MHC): G-LIKE-ALPHA1 [D1], G-LIKE-ALPHA2 [D2]
- IMGT Collier de perles: G-LIKE-DOMAINs on one layer
External links
Nomenclature
- HGNC: 1638
Genome databases
- Entrez Gene: 913
- GENATLAS: 78
- GeneCards: GC01P155540
- GDB: 1011000
- OMIM: 188411
Sequence databases
- EMBL: AL1121986, AF142669, AF364031, AF364032, AF364033, AF364034, AJ251334, AJ251335, AJ289111, AJ289112, AJ289113, AJ289114, AJ289115, AJ289116, AJ289117, AJ289118, AJ289119, AJ289120, AJ289121, AJ289122, X79517, X79518, X79519
- GenBank: AL1121986, AF142669, AF364031, AF364032, AF364033, AF364034, AJ251335, AJ251335, AJ289111, AJ289112, AJ289113, AJ289114, AJ289115, AJ289116, AJ289117, AJ289118, AJ289119, AJ289120, AJ289121, AJ289122, X79517, X79518, X79519
- DDBJ: AL1121986, AF142669, AF364031, AF364032, AF364033, AF364034, AJ251335, AJ251335, AJ289111, AJ289112, AJ289113, AJ289114, AJ289115, AJ289116, AJ289117, AJ289118, AJ289119, AJ289120, AJ289121, AJ289122, X79517, X79518, X79519
- Swiss-Prot: P15812
- TrEMBL:
- NCBI: NM_030893, NP_112155
Structure database
- PDB:
Created: 18/10/2006
Last updated: Friday, 22-Sep-2023 18:33:01 CEST
Authors: Sandra Ghayad
Editor: Chantal Ginestoux
Last updated: Friday, 22-Sep-2023 18:33:01 CEST
Authors: Sandra Ghayad
Editor: Chantal Ginestoux
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