IMGT Repertoire (RPI)

Here you are: IMGT Web resources > IMGT Repertoire (RPI) > RPI entries from gene to protein

IMGT RPI entry from gene to protein for Homo sapiens FCER1A

Citing IMGT RPI entry for FCER1A

Duprat, E. et al. IMGT standardization for alleles and mutations of the V-LIKE-DOMAINs and C-LIKE-DOMAINs of the immunoglobulin superfamily, Recent Research Developments in Human Genetics, 2, 111-136 (2004)

with permission from Research Signpost

IMGT gene name and definition

IMGT gene name: Homo sapiens FCER1A
IMGT gene definition: Fc fragment of IgE, high affinity I, receptor for alpha polypeptide

Chromosomal localization

Chromosome: 1
Chromosomal localization: 1q21-q23

Gene exon/intron organization

Legend:

Length of the exons and introns are in base pairs.
Colors are according to IMGT Color menu for regions and domains

Number of alleles: 2

IMGT reference alleles

Allele name	Gene functionality	IMGT reference sequences
Allele name	Gene functionality	Clone names	Accession numbers	Molecule type
FCER1A*01	F		X06948	cDNA
FCER1A*02	F		BC015195	cDNA

IMGT reference sequences (in FASTA format) for the allele(s): FCER1A*01 to FCER1A*02

Nucleotide sequence in FASTA format with gaps according to the IMGT unique numbering
Amino acid sequence in FASTA format with gaps according to the IMGT unique numbering
Nucleotide sequence in FASTA format without gaps
Amino acid sequence in FASTA format without gaps

Other sequences from the literature

Allele name	Gene functionality	IMGT reference sequences
Allele name	Gene functionality	Clone names	Accession numbers	Molecule type
FCER1A*01	F		J03605	cDNA
FCER1A*01	F		BC005912	cDNA

Corresponding protein database accession numbers

Allele name	Accession numbers		Number of amino acids	Protein isoform
Allele name	Nucleotide databases	Protein databases	Number of amino acids	Protein isoform
FCER1A*01	NM_002001	NP_001992	257 aa
FCER1A*01	X06948	P12319	257 aa

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

FCER1A*01: X06948(c)

Nucleotide sequence

1        atggctcctg ccatggaatc ccctactcta ctgtgtgtag ccttactgtt cttcgctcca

61       gatggcgtgt tagcagtccc tcagaaacct aaggtctcct tgaaccctcc atggaataga

121      atatttaaag gagagaatgt gactcttaca tgtaatggga acaatttctt tgaagtcagt

181      tccaccaaat ggttccacaa tggcagcctt tcagaagaga caaattcaag tttgaatatt

241      gtgaatgcca aatttgaaga cagtggagaa tacaaatgtc agcaccaaca agttaatgag

301      agtgaacctg tgtacctgga agtcttcagt gactggctgc tccttcaggc ctctgctgag

361      gtggtgatgg agggccagcc cctcttcctc aggtgccatg gttggaggaa ctgggatgtg

421      tacaaggtga tctattataa ggatggtgaa gctctcaagt actggtatga gaaccacaac

481      atctccatta caaatgccac agttgaagac agtggaacct actactgtac gggcaaagtg

541      tggcagctgg actatgagtc tgagcccctc aacattactg taataaaagc tccgcgtgag

601      aagtactggc tacaattttt tatcccattg ttggtggtga ttctgtttgc tgtggacaca

661      ggattattta tctcaactca gcagcaggtc acatttctct tgaagattaa gagaaccagg

721      aaaggcttca gacttctgaa cccacatcct aagccaaacc ccaaaaacaa ctga

Nucleotide sequence in FASTA format (without gaps) FCER1A*01

Amino acid sequence

1        MAPAMESPTL LCVALLFFAP DGVLAVPQKP KVSLNPPWNR IFKGENVTLT CNGNNFFEVS

61       STKWFHNGSL SEETNSSLNI VNAKFEDSGE YKCQHQQVNE SEPVYLEVFS DWLLLQASAE

121      VVMEGQPLFL RCHGWRNWDV YKVIYYKDGE ALKYWYENHN ISITNATVED SGTYYCTGKV

181      WQLDYESEPL NITVIKAPRE KYWLQFFIPL LVVILFAVDT GLFISTQQQV TFLLKIKRTR

241      KGFRLLNPHP KPNPKNN*

Amino acid sequence in FASTA format (without gap) FCER1A*01

Legend:

Colors are according to IMGT Color menu for regions and domains
Nucleotide and amino acid letters (in bold) in purple, green or blue are according to IMGT Color menu for splicing types.

IMGT links

IMGT Repertoire

Chromosomal localization:
Alignment of alleles:
Protein displays: C-LIKE-DOMAIN
IMGT Collier de perles: C-LIKE-DOMAIN on one layer, C-LIKE-DOMAIN on two layers

IMGT databases

IMGT/3Dstructure-DB: 1f6a

External links

Genome databases

Entrez Gene: 2205
GENATLAS:
GeneCards:
GDB:
OMIM: 147140

Sequence databases

EMBL: X06948, J03605, BC005912, BC015195, L14075
GenBank: X06948, J03605, BC005912, BC015195, L14075
DDBJ: X06948: J03605, BC005912, BC015195, L14075
Swiss-Prot: P12319
TrEMBL:
NCBI: NT_079484, NM_002001, NP_001992

Structure databases

PDB: 1F6A