# Pairwise evaluation and visualization of IMGT clonotype (AA) diversity and expression from IMGT/HighV-QUEST output

## Documentation for package ‘IMGTStatClonotype’ version 1.0.0

- DESCRIPTION file.

## Help Pages

clonNumDiv | Numbers of IMGT clonotypes (AA) in the two compared sets from the IMGT/HighV-QUEST output for clonotype diversity
clonNumExp | Numbers of IMGT clonotypes (AA) in the two compared sets from the IMGT/HighV-QUEST output for clonotype expression
clonRem | CDR3-IMGT outlier length
diffpropGph | Differences in proportions graph
GeneList | List of IMGT genes (data)
launch | IMGT/StatClonotype launch
meltgene | List of IMGT V and J genes
MID1 | CD4- population at Pre-vaccination IMGT/HighV-QUEST output
MID2 | CD4+ population at Pre-vaccination IMGT/HighV-QUEST output
multprocPlot | Multiples testing procedures displays
normjuxBars | Normalized bar graph of the proportions
preabsDiv | Gene presence/absence in the IMGT clonotypes (AA) for clonotype diversity
preabsExp | Gene presence/absence in the IMGT clonotypes (AA) for clonotype expression
S1 | Memory IgD+ B cell IMGT/HighV-QUEST output
S2 | Memory IgD- B cell IMGT/HighV-QUEST output
sigrepDiv | Significance of the difference in proportions with 95% confidence interval (CI) for IMGT clonotype (AA) diversity between two sets from IMGT/HighV-QUEST output
sigrepExp | Significance of the difference in proportions with 95% confidence interval (CI) for IMGT clonotype (AA) expression between two sets from IMGT/HighV-QUEST output