Package: IMGTStatClonotype
Type: Package
Title: Pairwise evaluation and visualization of IMGT clonotype (AA)
        diversity and expression from IMGT/HighV-QUEST output
Version: 1.0.1
Author: Safa Aouinti
Maintainer: Safa Aouinti <safa.aouinti@igh.cnrs.fr>
Depends: R(>= 3.3.0)
Imports: reshape2 (>= 1.4.1), data.table (>= 1.9.6), multtest (>=
        2.24.0), ggplot2 (>= 2.1.0), gridExtra (>= 2.0.0), DT (>= 0.1),
        shiny (>= 0.13.2), shinyjs (>= 0.4.0), plotly(>= 3.4.13),
        d3heatmap(>= 0.6.1)
Description: 'IMGTStatClonotype' developed by LIGM (Montpellier University, CNRS) and part of IMGT®, the international ImMunoGeneTics information system® (http://www.imgt.org) is an R package for statistical analysis of sets from IMGT/HighV-QUEST output. IMGT/HighV-QUEST is the IMGT web portal for next generation sequencing (NGS) analysis of immunoglobulins (IG) or antibodies and T cell receptor (TR) sequences. It provides a standardized and high quality output including the characterization of the IMGT clonotype (AA) diversity and expression and their comparison in up to one million sequences. 'IMGTStatClonotype' includes a generic and standardized procedure for evaluating the statistical significance of pairwise comparison between differences in proportions of the IMGT clonotypes (AA) diversity and expression per gene of a given IG or TR variable (V), diversity (D) or joining (J) group. The package 'IMGTStatClonotype' incorporates a user-friendly web interface, allowing use of the IMGT/StatClonotype tool, in users' own browser.
URL: http://www.imgt.org/StatClonotype/
License: LGPL
LazyData: TRUE
Encoding: UTF-8
RoxygenNote: 5.0.1
Built: R 3.3.1; ; 2016-09-13 08:52:18 UTC; windows
