Pairwise evaluation and visualization of IMGT clonotype (AA) diversity and expression from IMGT/HighV-QUEST output

Documentation for package ‘IMGTStatClonotype’ version 1.0.1

clonNumDiv	Numbers of IMGT clonotypes (AA) in the two compared sets from the IMGT/HighV-QUEST output for clonotype diversity
clonNumExp	Numbers of IMGT clonotypes (AA) in the two compared sets from the IMGT/HighV-QUEST output for clonotype expression
clonRem	CDR3-IMGT outlier length
diffpropGph	Differences in proportions graph
GeneList	List of IMGT genes (data)
launch	IMGT/StatClonotype launch
meltgene	List of IMGT V and J genes
MID1	CD4- population at Pre-vaccination IMGT/HighV-QUEST output
MID2	CD4+ population at Pre-vaccination IMGT/HighV-QUEST output
multprocPlot	Multiples testing procedures displays
normjuxBars	Normalized bar graph of the proportions
preabsDiv	Gene presence/absence in the IMGT clonotypes (AA) for clonotype diversity
preabsExp	Gene presence/absence in the IMGT clonotypes (AA) for clonotype expression
S1	Memory IgD+ B cell IMGT/HighV-QUEST output
S2	Memory IgD- B cell IMGT/HighV-QUEST output
sigrepDiv	Significance of the difference in proportions with 95% confidence interval (CI) for IMGT clonotype (AA) diversity between two sets from IMGT/HighV-QUEST output
sigrepExp	Significance of the difference in proportions with 95% confidence interval (CI) for IMGT clonotype (AA) expression between two sets from IMGT/HighV-QUEST output