S2 {IMGTStatClonotype} | R Documentation

## Memory IgD- B cell IMGT/HighV-QUEST output

### Description

The data of one set from IMGT/HighV-QUEST output used here as an example.

### Usage

    data("S2")

### Format

A data frame with 17308 observations on the following 26 variables:

cdr3aa: CDR3-IMGT sequence (AA)

expid: Experimental ID

clonoIndex: Representative sequence index

onecopy: Nb of '1 copy'

morethanone: Nb of 'More than one'

total: Total nb of '1 copy' and 'More than one'

indexes: '1 copy' Indexes

vgene: V-gene

vallele: V-allele

dgene: D-gene

dallele: D-allele

jgene: J-gene

jallele: J-allele

cdr1: CDR1-IMGT

cdr2: CDR2-IMGT

gcdr1: CDR1-IMGT gapped sequence (AA)

gcdr2: CDR2-IMGT gapped sequence (AA)

pid: % identity with the closest germline IMGT V gene and allele

length: Sequence length

c104: C104 (1st-CYS)

f118: F118 or W118 (J-PHE or J-TRP)

anchors: Anchors (C104, F118 or W118)

seqid: Sequence ID

functionality: Functionality

sequenceFileNumber: Sequence file number

sequenceClonoFileNumber: Sequence clonotype file number

### Source

Sequencing data used for this example is available in the NCBI Sequence Read Archive under the accession code SRX470416. The description of this data is available in Mroczek E.S. et al. (2014).

### References

Mroczek E.S., Ippolito G.C., Rogosch T., Hoi K.H., Hwangpo T.A., Brand M.G. et al. (2014) Differences in the composition of the human antibody repertoire by B cell subsets in the blood. Front Immunol. 5:96. doi: 10.3389/fimmu.2014.00096. PMID: 24678310.

### Examples

     data(S2)
     str(S2)

[Package IMGTStatClonotype version 1.0.3 Index]