meltgene {IMGTStatClonotype} | R Documentation

## List of IMGT V and J genes

### Description

This function allows the creation of a new matrix grouping the columns vgene, dgene and jgene in one column with their identifier (ID).

### Usage

    meltgene(data, ..., variable.name = "Gene_Type", value.name = "Gene_Name")

### Arguments

`data` | a set from the IMGT/HighV-QUEST output
`...` | further arguments passed to or from other methods
`variable.name` | name of variable used to store measured variable names, by default "Gene_Type"
`value.name` | name of variable used to store values, by default "Gene_Name"

### Details

This function must be applied for the two sets from the IMGT/HighV-QUEST output to be compared. It is based on the function melt of the package reshape2.

### Value

New matrix with 4 columns: "expid" (Experimental ID), "total" (Total nb of '1 copy' and 'More than one'), "Gene_Type" (V D or J genes), "Gene_Name" (Gene names).

### References

Wickham H. (2007) Reshaping Data with the reshape Package. Journal of Statistical Software, 21(12), 1-20. http://www.jstatsoft.org/v21/i12/

### Examples

    set1<-meltgene(MID1)
    set2<-meltgene(MID2)

[Package IMGTStatClonotype version 1.0.3 Index]