preabsExp {IMGTStatClonotype}R Documentation

Gene presence/absence in the IMGT clonotypes (AA) for clonotype expression

Description

This function allows the creation of a new matrix indicating the presence or the absence of genes in the sequences assigned to IMGT clonotypes (AA) for clonotype expression.

Usage

preabsExp(datag, data)

Arguments

datag

IMGT/HighV-QUEST output without CDR3-IMGT outlier lengths issued from the function clonRem

data

issued from the function meltgene

Value

Matrix with sequences assigned to IMGT clonotypes (AA) in rows and gene names in columns.

Examples


e1<-preabsExp(MID1,set1)
e2<-preabsExp(MID2,set2)


[Package IMGTStatClonotype version 1.0.3 Index]