S2 {IMGTStatClonotype} | R Documentation |
The data of one set from IMGT/HighV-QUEST output used here as an example.
data("S2")
A data frame with 17308 observations on the following 26 variables:
cdr3aa: CDR3-IMGT sequence (AA)
expid: Experimental ID
clonoIndex: Representative sequence index
onecopy: Nb of '1 copy'
morethanone: Nb of 'More than one'
total: Total nb of '1 copy' and 'More than one'
indexes: '1 copy' Indexes
vgene: V-gene
vallele: V-allele
dgene: D-gene
dallele: D-allele
jgene: J-gene
jallele: J-allele
cdr1: CDR1-IMGT
cdr2: CDR2-IMGT
gcdr1: CDR1-IMGT gapped sequence (AA)
gcdr2: CDR2-IMGT gapped sequence (AA)
pid: % identity with the closest germline IMGT V gene and allele
length: Sequence length
c104: C104 (1st-CYS)
f118: F118 or W118 (J-PHE or J-TRP)
anchors: Anchors (C104, F118 or W118)
seqid: Sequence ID
functionality: Functionality
sequenceFileNumber: Sequence file number
sequenceClonoFileNumber: Sequence clonotype file number
Sequencing data used for this example is available in the NCBI Sequence Read Archive under the accession code SRX470416. The description of this data is available in Mroczek E.S. et al. (2014).
Mroczek E.S., Ippolito G.C., Rogosch T., Hoi K.H., Hwangpo T.A., Brand M.G. et al. (2014) Differences in the composition of the human antibody repertoire by B cell subsets in the blood. Front Immunol. 5:96. doi: 10.3389/fimmu.2014.00096. PMID: 24678310.
data(S2) str(S2)