GeneList {IMGTStatClonotype}R Documentation

List of IMGT genes (data)

Description

The data contains the list of IMGT gene names ordered by their positions in the locus. This order is considered in the results visualization.

Usage

data("GeneList")

Format

A data frame with 4031 observations (raws) and 4 variables (columns). Rows represent the list of IMGT gene names (first column) ordered depending on species (second column), IMGT gene names with functionality (3rd column) and the locus (4th column).

Source

http://www.imgt.org/IMGTrepertoire/LocusGenes/

References

Giudicelli V., Chaume D., Lefranc M-P. (2005) IMGT/GENE-DB: a comprehensive database for human and mouse immunoglobulin and T cell receptor genes. Nucleic Acids Res. 33(Database issue):D256-61. doi: 10.1093/nar/gki010. PMID: 15608191.

Lefranc M-P. and Lefranc G. (2001) The T cell receptor FactsBook. Academic Press, London, UK (398 pages).

Lefranc M-P. and Lefranc G. (2001) The Immunoglobulin FactsBook. Academic Press, London, UK (458 pages).

Lefranc, M-P. (2014) Immunoglobulin (IG) and T cell receptor genes (TR): IMGT® and the birth and rise of immunoinformatics. Front. Immunol. 5:22. doi: 10.3389/fimmu.2014.00022. PMID: 24600447.


[Package IMGTStatClonotype version 1.0.3 Index]