IMGT reference directory: J-REGION Chondrichthyes IGHJ set

The IMGT reference directory contains sets of allele sequences isolated from the IMGT reference sequences. By definition, these sets contain one sequence for each allele.

Authors: Véronique Giudicelli (Veronique.Giudicelli@igh.cnrs.fr) and Marie-Paule Lefranc (Marie-Paule.Lefranc@igh.cnrs.fr)

Software material and data coming from IMGT server may be used for academic research only, provided that it is referred to IMGT®, and cited as "IMGT®, the international ImMunoGeneTics information system® http://www.imgt.org (founder and director: Marie-Paule Lefranc, Montpellier, France)." References to cite: Lefranc, M.-P. et al., Nucleic Acids Res., 27:209-212 (1999); doi: 10.1093/nar/27.1.209 Full text Cover; Ruiz, M. et al., Nucleic Acids Res., 28:219-221 (2000); doi: 10.1093/nar/28.1.219 Full text; Lefranc, M.-P., Nucleic Acids Res., 29:207-209 (2001); doi: 10.1093/nar/29.1.207 Full text; Lefranc, M.-P., Nucleic Acids Res., 31:307-310 (2003); doi: 10.1093/nar/gkg085 Full text; Lefranc, M.-P. et al., In Silico Biol., 5, 0006 (2004) [Epub], 5:45-60 (2005); Lefranc, M.-P. et al., Nucleic Acids Res., 33:D593-597 (2005); doi: 10.1093/nar/gki065 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 37:D1006-1012 (2009); doi: 10.1093/nar/gkn838 Full text; Lefranc, M.-P. et al., Nucleic Acids Res., 43:D413-422 (2015); doi: 10.1093/nar/gku1056 Full text.
For any other use please contact Marie-Paule Lefranc Marie-Paule.Lefranc@igh.cnrs.fr.

Species are designated with "short" names (the three first letters from the genus and species names):

for Leucoraja erinacea (Little skate): Leueri
for Raja eglanteria (Clearnose skate): Rajegl
for Carcharhinus leucas (Bull shark): Carleu
for Carcharhinus plumbeus (Sandbar shark): Carplu
for Heterodontus francisci (Horned shark): Hetfra
for Hydrolagus colliei (Spotted ratfish): Hydcol
for Ginglyomostoma cirratum (Nurse shark): Gincir
for Orectolobus maculatus (Spotted wobbegong shark) : Oremac

>U40560_IGHJ1*01_Carplu
TTTGATTATTGGGGGAATGGAACCTTCGTGGAAGTGACTTCA
>U50605_IGHJ2*01_Carplu
TTTGATTTTTGGGGGAGCGGAACCTTCGTGGAAGTGACTTCA
>U50604_IGHJ3*01_Carplu
TTTGATTACTGGGGGAGCGGAACCTTCGTGGAAGTGACTTCA
>U50607_IGHJ4*01_Carplu
GGGGATTATTGGGGGAAGGGAACCTTCGTGGAAGTGACTTCA
>U50606_IGHJ5*01_Carplu
TCACGTTATTGGGGGAGCGGAACCTTCGTGGAAGTGACTTCA
>U50608_IGHJ6*01_Carplu
TTTGATTATTGGGGGAGCGGAACCTTCATGGAAGTGACTTCA
>U50609_IGHJ7*01_Carplu
TTTGATTATTGGGGGAATGGAACCTTCGTGGAAGTGACTTCA
>U50610_IGHJ8*01_Carplu
TTTGATGTCTGGGGGAATGGAACCTTCGTGGAAGTGACTTCA
>U50611_IGHJ1*01_Carleu
TATCTTGATTATTGGGGGAGCGGAACCTTCGTGGAAGTCAATTCA
>U50612_IGHJ2*01_Carleu
GATTATTGGGGGAGCGGAACCTTCGTGGAAGTGACTTCA
>U50613_IGHJ3*01_Carleu
TATCTTGATTATTGGGGGAGCGGAACCTCCCTGGAAGTGACTTCA
>U50614_IGHJ4*01_Carleu
CTTGATGGTTGGGGAAGCGGAACCTTCTTGGAAGTGACTCCA
>L38965_IGHJ1*01_Gincir
ACAGCTATGAATACGGAGGTGGCACTGTCGTGACTGTAAATCCT
>L38966_IGHJ2*01_Gincir
ACAGCTTTGATGAATACGGAGGTGGCACTGTCGTGACTG
>L38967_IGHJ3*01_Gincir
ACAGCTATGAATACGGAGGTGGCACTGTCGTGACTG
>L38968_IGHJ4*01_Gincir
ACAACTATGCTGCATGCGGCGACGGCACTGCCGTGACTT
>M92851_IGHJ5*01_Gincir
GGTTACTGGGGACAAGGAACCATGGTGACCGTGACTACA
>AF327520_IGHJ6*01_Gincir
GCGTTGGACTACTGGGGACAAGGGACCAGAGTAACGGTAACT
>U18701_IGHJ7*01_Gincir
GCATGCGGATCAGGCACTGCCGTGACTGTTACTCCT
>U18680_IGHJ8*01_Gincir
TACGGAGGTGGCACTGGCGTGACTGTGAATCCT
>U18716_IGHJ9*01_Gincir
TATGGAGGTGGCACTGTCGTGACTGTGAATCCT
>U18717_IGHJ10*01_Gincir
GCATGCGGAGATGGCACTTTCGTGACTGTGAATCCT
>U18686_IGHJ11*01_Gincir
TACGGAGCTGACACTGTCGTGACTGTCAATCCT
>U18687_IGHJ12*01_Gincir
TATGCTGCATGTGGAGCTGGCACTGCCGTGACTGTGAATCCT
>U18714_IGHJ13*01_Gincir
TACGGCAGTGGCACTGTACTGACTGTGAATCCT
>U18718_IGHJ14*01_Gincir
GCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18713_IGHJ15*01_Gincir
TACGGAGGTGGCACTGTCGTGACTGTCAATCCT
>U18700_IGHJ16*01_Gincir
ATCTATGATGAATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18702_IGHJ17*01_Gincir
TGCGGAGATGGCACTGTCGTGACTGTGAATCCT
>U18715_IGHJ18*01_Gincir
TGCGGAGGTGGCACTGTCGTGACTGTGAATCCT
>U18726_IGHJ19*01_Gincir
TACGGAGGTGGCACTGTCGTGACTGTGAATCCT
>U18693_IGHJ20*01_Gincir
TATGCTGCAGTAGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18725_IGHJ21*01_Gincir
TGCGGAGAGGGCACTGCCGTGACTGTCAACCCT
>U18685_IGHJ22*01_Gincir
GCTGCATGCGGTCATGGCACTGCCGTGACTGTGACTTCT
>U18688_IGHJ23*01_Gincir
TACGGAGGTGGCACTGTCGTGACTGTGAATCCT
>U18724_IGHJ24*01_Gincir
TGCGGCGACGGCACTACCGTGACTGTTCATCCT
>U18696_IGHJ25*01_Gincir
TATGCTGCCTGCGGACCTGGCACTACCGTGACTGTGAATCCT
>U18705_IGHJ26*01_Gincir
TATGCTGCATGCGGACATGGCACTGCCGTGACTGTGAATGCC
>U18703_IGHJ27*01_Gincir
GCATGCGGTCATGGAACTGCCGTGACTGTGAATCCT
>U18682_IGHJ28*01_Gincir
TGCGGAGATGGAACTGCCGTGACGGTGAATCCT
>U18706_IGHJ29*01_Gincir
TATGCTGCATGCGGAGATGCCACTGCCGTGACTGTGAATCCT
>U18704_IGHJ30*01_Gincir
GCATGTGGAGATGGCACTGTCGTGACTGTGAGTCCT
>U18681_IGHJ31*01_Gincir
TGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18684_IGHJ32*01_Gincir
TATGCTGCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18708_IGHJ33*01_Gincir
TGCGGAGATAACACTGCCGTGACTGTGAATCCT
>U18722_IGHJ34*01_Gincir
GCATGCGGACATGGCACTACAGTGACTGTCGCTCCA
>U18683_IGHJ35*01_Gincir
TGCGGAGATGGCACTGTTTTGACTGTGAATCCT
>U18690_IGHJ36*01_Gincir
GCTGCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18695_IGHJ37*01_Gincir
GCATGCGGACTCGGCACTGCCGTGACTGTGAATCCT
>U18712_IGHJ38*01_Gincir
TATGCTGCGTGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18719_IGHJ39*01_Gincir
GCTGCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18691_IGHJ40*01_Gincir
TACGGAGGTGGCACTGTCGTGACTGTGAATCCT
>U18694_IGHJ41*01_Gincir
GCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18720_IGHJ42*01_Gincir
GCTGCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18698_IGHJ43*01_Gincir
TGCGGAGGCGGCACTGACGTGACTGTGAATACG
>U18692_IGHJ44*01_Gincir
GCTGCATGCGGAGATGGCACTGCCGTGACTGTGAAT
>U18707_IGHJ45*01_Gincir
TATGCTGCATGCGGAGATGGCACTGC.GTGACTGTGAATCCT
>U18699_IGHJ46*01_Gincir
TATGCTGCATGTGGAGATGGCACCTCCGTGACTGTGAATCCT
>U18710_IGHJ47*01_Gincir
TATGCTGCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>U18689_IGHJ48*01_Gincir
GCTGCCTGCGGAGAGGGCACTGCCGTGACTGTGAATCCT
>U18709_IGHJ49*01_Gincir
TATGCTGCATGCGGGGACGGCACTACCGTGACTGTGAAGCCT
>U51450_IGHJ50*01_Gincir
CTTGACTACTGGGGAGACGGAACCTTTCTGGAAGTGACTTCA
>U18697_IGHJ51*01_Gincir
TGCGGAGATGGCACTGCCGTGACTGTGAACCCT
>U18723_IGHJ52*01_Gincir
GCATGCGGAGATGGCACTGCCGTGACTGTGAATCCT
>X13447_IGHJ1*01_Hetfra
ACGCCATGGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCAG
>X13449_IGHJ2*01_Hetfra
TCTATGGACTACTGGGGACAAGGGACCATGGTGACAGTGACTGCA
>Z11777_IGHJ3*01_Hetfra
ACTATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCAG
>Z11776_IGHJ4*01_Hetfra
ACATCATGGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCAG
>X13448_IGHJ5*01_Hetfra
ACACCATGGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCAG
>Z11779_IGHJ6*01_Hetfra
ACTATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCAG
>Z11781_IGHJ7*01_Hetfra
TATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCA
>Z11782_IGHJ8*01_Hetfra
CTCGCTCACTGGGGACAAGGGACCATGGTGACGGTGACTGCA
>Z11783_IGHJ9*01_Hetfra
ACTACCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCA
>Z11784_IGHJ10*01_Hetfra
CTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCA
>Z11785_IGHJ11*01_Hetfra
ATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGAA
>Z11786_IGHJ12*01_Hetfra
 CTATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGTA
>Z11787_IGHJ13*01_Hetfra
ACTATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTAAGTGCA
>Z11788_IGHJ14*01_Hetfra
 CTATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCA
>Z11789_IGHJ15*01_Hetfra
CTCGACTACTGGGGACAGGGGACCATGGTGACGGTGACTGCA
>Z11791_IGHJ16*01_Hetfra
CACCATGGACTACTGGGGACAAGGGACCATGGTGACGGTGACT TCA
>Z11792_IGHJ17*01_Hetfra
TGGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGTA
>X03748_IGHJ18*01_Hetfra
TACTATTTTGACTTTTGGGGACAAGGGACCATGGTGACGGTGACTGCA
>AF003840_IGHJ1*01_Hydcol
ACTATAACCCTTACTACTGGGGACGAGGCACGAAGGTGACGGTGACTGAAG
>AF003946_IGHJ2*01_Hydcol
GACTACTGGGGACAAGGCACCATGGTGACAGTGACTGACG
>AF003839_IGHJ3*01_Hydcol
CTTGACTACTGGGGACAAGGGACCATGCTGACAGTGACTGAC
>AF004359_IGHJ4*01_Hydcol
GACTACTGGGGACAAGGCACCATGGTGACAGTGACTGAC
>AF004360_IGHJ5*01_Hydcol
GACTACTGGGGACAAGGCACCATGGTGACAGTGACTGAC
>AF003853_IGHJ6*01_Hydcol
AACCCTTACTACTGGGGACGAGGCACGAAGGTGACAGTGACTGAA
>AF003841_IGHJ7*01_Hydcol
ACTACCTTGACTGCTGGGGACAAGGCACCATGGTGACAGTGACTAACG
>AF003854_IGHJ8*01_Hydcol
GACTACTGGGGACAAGGGACCATGCTGACAGTGAATGAT
>AF003855_IGHJ9*01_Hydcol
GACTACTGGGGACAAGGGACCATGCTGACAGTGAATGAT
>AF003856_IGHJ10*01_Hydcol
TATCTTGACTACTGGGGACAAAGGACCATGCTGACAGTGAATGAC
>AF003857_IGHJ11*01_Hydcol
GACTACTGGGGACAAGGGACCATGCTGACAGTGACTGAC
>AF003858_IGHJ12*01_Hydcol
TATCTTGACTACTGGGGACAAGGGACCATGCTCACAGTGACTGAC
>AF003859_IGHJ13*01_Hydcol
TATCTTGACTACTGGGGACAAGGGACCATGCTGACAGTGACTGAC
>AF003860_IGHJ14*01_Hydcol
TATCTTGACTACTGGGGACAAGGGACCATGCTGACAGTGACTGAC
>AF003861_IGHJ15*01_Hydcol
TATCTTGAATACTGGGGACAAGGGACCATGCTGACAGTGACTGAC
>AF336087_IGHJ1*01_Oremac
CCCGAGAAAGGAGTTGGCACCGTACTGACCGTGAGA
>AF336088_IGHJ2*01_Oremac
GTGTGGTGGGGAGCTGGCACCGTACTGACCGTGAAA
>AF336089_IGHJ3*01_Oremac
GACTATAAAGGAGGTGACACCCTTTTGACCGTGAAA
>AF336090_IGHJ4*01_Oremac
GAAAGACCTGGCACCGCATTAACCGTGAAA
>AF336091_IGHJ5*01_Oremac
TACGAGAAAGGAGCTGGCACCGTACTGACCGTGAAA
>AF336092_IGHJ6*01_Oremac
AACGAGAAAGGAGCTGGCACCGTACTGACCGTGAAA
>AF336093_IGHJ7*01_Oremac
GACGAGGAAGGGGCTGGCACCGTACTGACCGTGAAA
>AF336094_IGHJ8*01_Oremac
GGGGGAGCTGGCACCGTATTAACCGTGAAA
>U08009_IGHJ1*01_Rajegl
TCTTGACTACTGGGGTGCAGGAACCTCGCTGACAGAGACTTCAG
>U08010_IGHJ2*01_Rajegl
CTTGACTACTGGGGTGCAGGAACCTCGCTGACAGTGACTTCA
>U08011_IGHJ3*01_Rajegl
TCTTGACTACTGGGGTGCAGGAACCTCGCTGACAGTGACTTCA
>U08012_IGHJ4*01_Rajegl
CTTGAATACTGGGGTGCAGGAACCTCGCTGACAGTGACTTCA
>X15124_IGHJ1*01_Leueri
ACTATCTTGACTACTGGGGAGAAGGCACCATGGTGACGGTAACCAGCG
>X15125_IGHJ2*01_Leueri
ACTCTCCTAACTACTGGGGAGGAGGCAGCATGGTGACGGTAACCTGCG
>X16146_IGHJ3*01_Leueri
TATCCTGACTACTGGGGAGGAGGAACCATGGTGACGGTAACCAGCG
>M29672_IGHJ4*01_Leueri
TGGCTTGAGTACTGGGGTGCAGGAACCTCGCTGACAGTGACTTCA
>M29679_IGHJ5*01_Leueri
ACTATCTCGACTACTGGGGACAAGGGACCATGGTGACGGTGACTGCA

Created: : 31/01/2002
Last updated : 22/07/2003

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