Chimpanzee (Pan troglodytes) TRD locus on chromosome 15
- The Chimpanzee (Pan troglodytes) TRD locus is on chromosome 15.
The orientation of the locus is forward (FWD).
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The Chimpanzee (Pan troglodytes) TRA/TRD locus spans 950 kilobases (kb), from 10 kb upstream of the most 5' gene in the locus, TRAV1-1 (F),
to 10 kb downstream of the most 3' gene in the locus, TRAC (F). The Locus representation encompasses 1000 kb including the 5' borne OR10G3 and the 3' borne DAD1.
- The Chimpanzee (Pan troglodytes) TRD locus consists of 3 TRDV genes
belonging to 3 TRDV subgroups, 3 TRDD genes, 4 TRDJ genes and a unique TRDC gene.
- The TRDV genes span 35 kilobases (kb), the TRDJ genes span 11 kilobases (kb), the TRDD
genes span 19 kilobases (kb), the TRDC gene spans 8 kilobases (kb).
Clusters
- The TRDV genes are localized in 2 V-CLUSTER:
- the 5' V-CLUSTER, classically in 5' of the TRDD, TRDJ and
TRDV, includes 2 TRDV genes belonging to 2 subgroups.
- the 3' V-CLUSTER, downstream of the TRDC in inverted
orientation, includes 1 TRDV gene.
- The TRDD, TRDJ and TRDC genes are localized in one
D-J-C-CLUSTER between the 5' V-CLUSTER and the 3' V-CLUSTER:
- The CLUSTER includes 3 TRDD, 4 TRDJ and 1 TRDC functional .
Bornes of the Chimpanzee (Pan troglodytes) TRA/TRD locus on chromosome 15
- OR10G3 (5' borne) has been identified 51 kb upstream of TRAV1-1, the most 5' gene in the locus.
- DAD1 (3' borne) has been identified 15 kb downstream of TRAC, the most 3' gene in the locus.
- Created:
- 22/07/2025
- Last updated:
- 26/01/2026 20:01
- Author:
- Hugo Magnani, Joumana Jabado-Michaloud
