IMGT Repertoire (IG and TR)

Potential germline repertoire: Bornean orangutan (Pongo pygmaeus) IGKV and IGKJ genes on chromosome 12

For a comparative repertoire between different assemblies' annotations, see: Bornean orangutan (Pongo pygmaeus) IGK locus gene repertoire per assembly.

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Bornean orangutan (Pongo pygmaeus) IGKV genes

The Bornean orangutan (Pongo pygmaeus) IGK locus on chromosome 12 comprises 73 IGKV genes belonging to 8 IGKV subgroups and 1 IGKV clan :

IMGT group	IMGT subgroup	Functional	ORF	Pseudogene	Total
IGKV	IGKV1	18	2	5(3:2)	25
	IGKV2	7	0	13(6:7)	20
	IGKV3	5	0	5(0:5)	10
	IGKV4	1	0	0	1
	IGKV5	1	0	0	1
	IGKV6	0	1	1(1:0)	2
	IGKV7	1	0	0	1
	IGKV9	0	1	1(0:1)	2
	IGKV(II)	0	0	11(0:11)	11
Total		33	4	36	73

In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown separated by two dots, between parentheses.

Bornean orangutan (Pongo pygmaeus) IGKJ genes

The Bornean orangutan (Pongo pygmaeus) IGK locus on chromosome 12 comprises 5 IGKJ genes :

IMGT group	IMGT set or subgroup (if any)	Functional	Pseudogene	Total
IGKJ	IGKJ1	1	0	1
	IGKJ2	1	0	1
	IGKJ3	1	0	1
	IGKJ4	1	0	1
	IGKJ5	0	1(1:0)	1
Total		4	1	5

In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown separated by two dots, between parentheses.

More information:
Gene table: Bornean orangutan (Pongo pygmaeus) IGKV
Gene table: Bornean orangutan (Pongo pygmaeus) IGKJ
Locus description: Bornean orangutan (Pongo pygmaeus) IGK