IMGT Repertoire (IG and TR)

Potential germline repertoire: Bornean orangutan (Pongo pygmaeus) TRBV genes on chromosome 6

For a comparative repertoire between different assemblies' annotations, see: Bornean orangutan (Pongo pygmaeus) TRB locus gene repertoire per assembly.

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Bornean orangutan (Pongo pygmaeus) TRBV genes

The Bornean orangutan (Pongo pygmaeus) TRB locus on chromosome 6 comprises 80 TRBV genes belonging to 33 TRBV subgroups :

The TRBV genes are localized in 2 V-CLUSTER:

the 5' V-CLUSTER, classically in 5' of the TRBD, TRBJ and TRBC, includes 79 TRBV genes belonging to 32 subgroups.
the 3' V-CLUSTER, downstream of the TRBC in inverted orientation, includes 1 TRBV gene.

IMGT group	IMGT set or subgroup (if any)	Functional	ORF	Pseudogene	Total
TRBV	TRBV1	0	0	4(3:1)	4
	TRBV2	4	0	0	4
	TRBV3	2	0	1(0:1)	3
	TRBV4	3	0	1(1:0)	4
	TRBV5	7	1	1(0:1)	9
	TRBV6	4	3	2(2:0)	9
	TRBV7	7	1	2(1:1)	10
	TRBV8	0	0	2(0:2)	2
	TRBV9	1	0	0	1
	TRBV10	1	2	0	3
	TRBV11	1	1	1(0:1)	3
	TRBV12	4	2	1(1:0)	7
	TRBV13	1	0	0	1
	TRBV14	1	0	0	1
	TRBV15	1	0	0	1
	TRBV16	1	0	0	1
	TRBV17	0	0	1(1:0)	1
	TRBV18	1	0	0	1
	TRBV19	1	0	0	1
	TRBV20	1	0	0	1
	TRBV21	0	0	1(1:0)	1
	TRBV22	0	0	1(0:1)	1
	TRBV23	0	0	1(1:0)	1
	TRBV24	1	0	0	1
	TRBV25	0	1	0	1
	TRBV26	0	0	1(1:0)	1
	TRBV27	1	0	0	1
	TRBV28	1	0	0	1
	TRBV29	1	0	0	1
	TRBV30	1	0	0	1
	TRBVA	0	0	1(0:1)	1
	TRBVB	0	0	1(0:1)	1
	TRBVC	0	0	1(0:1)	1
Total		46	11	23	80

In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown separated by two dots, between parentheses.

Bornean orangutan (Pongo pygmaeus) TRBD genes

The Bornean orangutan (Pongo pygmaeus) TRB locus on chromosome 6 comprises 2 TRBD genes belonging to 2 TRBD sets:

2 FUNCTIONAL

IMGT group	IMGT set or subgroup (if any)	Functional	Total
TRBD	TRBD1	1	1
TRBD	TRBD2	1	1
Total		2	2

Bornean orangutan (Pongo pygmaeus) TRBJ genes

The Bornean orangutan (Pongo pygmaeus) TRB locus on chromosome 6 comprises 14 TRBJ genes belonging to 2 sets:

IMGT group	IMGT set or subgroup (if any)	Functional	ORF	Pseudogene	Total
TRBJ	TRBJ1	5	0	1(1:0)	6
TRBJ	TRBJ2	7	1	0	8
Total		12	1	1(1:0)	14

More information:
Gene table: Bornean orangutan (Pongo pygmaeus) TRBV
Gene table: Bornean orangutan (Pongo pygmaeus) TRBD
Gene table: Bornean orangutan (Pongo pygmaeus) TRBJ
Gene table: Bornean orangutan (Pongo pygmaeus) TRBC
Locus description: Bornean orangutan (Pongo pygmaeus) TRB