IMGT Repertoire (IG and TR)

Potential germline repertoire: Sumatran orangutan (Pongo abelii) IGLV and IGLJ genes on chromosome 22

For a comparative repertoire between different assemblies' annotations, see: Sumatran orangutan (Pongo abelii) IGL locus gene repertoire per assembly.

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Sumatran orangutan (Pongo abelii) IGLV genes

The Sumatran orangutan (Pongo abelii) IGL locus on chromosome 22 comprises 105 IGLV genes belonging to 11 IGLV subgroups and 6 clans :

IMGT group	IMGT subgroup	Functional	ORF	Pseudogene	Total
IGLV	IGLV1	4	0	4(1:3)	8
	IGLV2	6	0	5(1:4)	11
	IGLV3	11	1	17(4:13)	29
	IGLV4	1	1	5(3:2)	7
	IGLV5	2	1	7(0:7)	10
	IGLV6	2	0	1(0:1)	3
	IGLV7	1	0	5(1:4)	6
	IGLV8	1	0	0	1
	IGLV9	0	0	1(0:1)	1
	IGLV10	1	0	2(0:2)	3
	IGLV11	1	0	0	1
	IGLV(I)	0	0	9(0:9)	9
	IGLV(II)	0	0	3(0:3)	3
	IGLV(III)	0	0	1(0:1)	1
	IGLV(IV)	0	0	6(0:6)	6
	IGLV(VI)	0	0	3(0:3)	3
	IGLV(VII)	0	0	3(0:3)	3
Total		29	3	73	105

In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown separated by two dots, between parentheses.

Sumatran orangutan (Pongo abelii) IGLJ genes

The Sumatran orangutan (Pongo abelii) IGL locus on chromosome 22 comprises 7 IGLJ genes :

IMGT group	IMGT set or subgroup (if any)	Functional	ORF	Total
IGLJ	IGLJ1	1	0	1
	IGLJ2	1	0	1
	IGLJ3	0	1	1
	IGLJ4	0	1	1
	IGLJ5	0	1	1
	IGLJ6	1	0	1
	IGLJ7	1	0	1
Total		4	3	7

In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown separated by two dots, between parentheses.

More information:
Gene table: Sumatran orangutan (Pongo abelii) IGLV
Gene table: Sumatran orangutan (Pongo abelii) IGLJ
Locus description: Sumatran orangutan (Pongo abelii) IGL