IMGT Repertoire (IG and TR)

Potential germline repertoire: Sumatran orangutan (Pongo abelii) TRBV genes on chromosome 6

For a comparative repertoire between different assemblies' annotations, see: Sumatran orangutan (Pongo abelii) TRB locus gene repertoire per assembly.

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Sumatran orangutan (Pongo abelii) TRBV genes

The Sumatran orangutan (Pongo abelii) TRB locus on chromosome 6 comprises 78 TRBV genes belonging to 33 TRBV subgroups :

The TRBV genes are localized in 2 V-CLUSTER:

the 5' V-CLUSTER, classically in 5' of the TRBD, TRBJ and TRBC, includes 77 TRBV genes belonging to 32 subgroups.
the 3' V-CLUSTER, downstream of the TRBC in inverted orientation, includes 1 TRBV gene.

IMGT group	IMGT set or subgroup (if any)	Functional	ORF	Pseudogene	Total
TRBV	TRBV1	0	0	4(3:1)	4
	TRBV2	4	0	0	4
	TRBV3	3	0	1(0:1)	4
	TRBV4	4	0	1(1:0)	5
	TRBV5	4	1	2(1:1)	7
	TRBV6	6	2	1(1:0)	9
	TRBV7	4	2	2(1:1)	8
	TRBV8	0	0	2(0:2)	2
	TRBV9	1	0	0	1
	TRBV10	1	2	0	3
	TRBV11	1	1	1(0:1)	3
	TRBV12	4	2	1(1:0)	7
	TRBV13	1	0	0	1
	TRBV14	1	0	0	1
	TRBV15	1	0	0	1
	TRBV16	1	0	0	1
	TRBV17	0	0	1(1:0)	1
	TRBV18	1	0	0	1
	TRBV19	1	0	0	1
	TRBV20	1	0	0	1
	TRBV21	0	0	1(1:0)	1
	TRBV22	0	0	1(0:1)	1
	TRBV23	0	0	1(1:0)	1
	TRBV24	1	0	0	1
	TRBV25	1	0	0	1
	TRBV26	0	0	1(1:0)	1
	TRBV27	1	0	0	1
	TRBV28	1	0	0	1
	TRBV29	1	0	0	1
	TRBV30	1	0	0	1
	TRBVA	0	0	1(0:1)	1
	TRBVB	0	0	1(0:1)	1
	TRBVC	0	0	1(0:1)	1
Total		45	10	23	78

In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown separated by two dots, between parentheses.

Sumatran orangutan (Pongo abelii) TRBD genes

The Sumatran orangutan (Pongo abelii) TRB locus on chromosome 6 comprises 2 TRBD genes belonging to 2 TRBD sets:

2 FUNCTIONAL

IMGT group	IMGT set or subgroup (if any)	Functional	Total
TRBD	TRBD1	1	1
TRBD	TRBD2	1	1
Total		2	2

Sumatran orangutan (Pongo abelii) TRBJ genes

The Sumatran orangutan (Pongo abelii) TRB locus on chromosome 6 comprises 14 TRBJ genes belonging to 2 sets:

IMGT group	IMGT set or subgroup (if any)	Functional	ORF	Pseudogene	Total
TRBJ	TRBJ1	5	0	1(1:0)	6
TRBJ	TRBJ2	7	1	0	8
Total		12	1	1(1:0)	14

More information:
Gene table: Sumatran orangutan (Pongo abelii) TRBV
Gene table: Sumatran orangutan (Pongo abelii) TRBD
Gene table: Sumatran orangutan (Pongo abelii) TRBJ
Gene table: Sumatran orangutan (Pongo abelii) TRBC
Locus description: Sumatran orangutan (Pongo abelii) TRB