IMGT Repertoire (IG and TR)

Alignment of alleles: house mouse (Mus musculus) TRAV10D

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.

Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

• Dots indicate gaps according to the IMGT unique numbering.
• Blanks at the 5' and/or 3' end indicate partial sequences.
• Asterisk (*) in the sequence indicate a STOP-CODON.
• Letters in red correspond to amino acids which are polymorphic in the other alleles.
• Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
• The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
• N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green

Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.

                                                                                                                              
                                              
                                               1   2   3   4   5   6   7   8   8A  9   10  11  12  13  14  15  16  17  18  19 
                                               G   E   K   V   E   Q   H   Q       S   T   L   S   V   R   E   G   D   S   A  
  AC003994   TRAV10D*01 F   V-REGION gDNA     gga gag aag gtc gag caa cac cag ... tct aca ctg agt gtt cga gag gga gac agc gct 

                                                                                                                              
  AC004101   TRAV10D*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                              
  AE007512   TRAV10D*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                              
  AE008684   TRAV10D*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                           E                                                  
  U46077     TRAV10D*02 (P) V-REGION gDNA     --- --- --- --- --- --- --- g-- ... --- --- --- --- --- --- --- --- --- --- --- 

                                                                           E                                                  
  IMGT000082 TRAV10D*03 F   V-REGION gDNA     --- --- --- --- --- --- --- g-- ... --- --- --- --- --- --- --- --- --- --- --- 



                                                                          ___________________CDR1-IMGT____________________    
                                              
                                               20  21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39 
                                               V   I   N   C   T   Y   T   D   T   A                           S   S   Y   F  
  AC003994   TRAV10D*01 F   V-REGION gDNA     gtc atc aac tgc act tac aca gat act gcc ... ... ... ... ... ... tca tca tac ttc 

                                                                                                                              
  AC004101   TRAV10D*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                              
  AE007512   TRAV10D*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                              
  AE008684   TRAV10D*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                              
  U46077     TRAV10D*02 (P) V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 

                                                                                                                              
  IMGT000082 TRAV10D*03 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- 



                                                                                                              _______________C
                                              
                                               40  41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59 
                                               P   W   Y   K   Q   E   A   G   K   S   L   H   F   V   I   D   I   R   S   N  
  AC003994   TRAV10D*01 F   V-REGION gDNA     cct tgg tac aag caa gaa gct gga aag agt ctc cac ttt gtg ata gac att cgt tca aat 

                                                                                                                              
  AC004101   TRAV10D*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                              
  AE007512   TRAV10D*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                              
  AE008684   TRAV10D*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                              
  U46077     TRAV10D*02 (P) V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                              
  IMGT000082 TRAV10D*03 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- 



                                              DR2-IMGT________________                                                        
                                              
                                               60  61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79 
                                                           V   D   R   K   Q   S                       Q   R   L   T   V   L  
  AC003994   TRAV10D*01 F   V-REGION gDNA     ... ... ... gtg gac aga aaa cag agc ... ... ... ... ... caa aga ctt aca gtt tta 

                                                                                                                              
  AC004101   TRAV10D*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                              
  AE007512   TRAV10D*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                              
  AE008684   TRAV10D*01 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                              
  U46077     TRAV10D*02 (P) V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 

                                                                                                                   I          
  IMGT000082 TRAV10D*03 F   V-REGION gDNA     ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- -t- --- --g 



                                                                                                                              
                                              
                                               80  81  82  83  84 84A  85  86  87  88  89  90  91  92  93  94  95  96  97  98 
                                               L   D   K   K   A       K   R   F   S   L   H   I   T   A   T   Q   P   E   D  
  AC003994   TRAV10D*01 F   V-REGION gDNA     ttg gat aag aaa gcc ... aaa cga ttc tcc ctg cac atc aca gcc aca cag cct gaa gat 

                                                                                                                              
  AC004101   TRAV10D*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                              
  AE007512   TRAV10D*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                              
  AE008684   TRAV10D*01 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                              
  U46077     TRAV10D*02 (P) V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 

                                                                                                                              
  IMGT000082 TRAV10D*03 F   V-REGION gDNA     --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- 



                                                                      ___CDR3-IMGT____
                                              
                                               99 100 101 102 103 104 105 106 107 
                                               S   A   I   Y   F   C   A   A   S  
  AC003994   TRAV10D*01 F   V-REGION gDNA     tca gcc atc tac ttc tgt gca gca agc a

                                                                                  
  AC004101   TRAV10D*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                  
  AE007512   TRAV10D*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                                  
  AE008684   TRAV10D*01 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

                                                                               A  
  U46077     TRAV10D*02 (P) V-REGION gDNA     --- --- --- --- --- --- --- --- gca 

                                                                                  
  IMGT000082 TRAV10D*03 F   V-REGION gDNA     --- --- --- --- --- --- --- --- --- -

This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).