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IMGT Repertoire (IG and TR)
Alignment of alleles: house mouse (Mus musculus) TRAV14D-2
When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
- Dots indicate gaps according to the IMGT unique numbering.
- Blanks at the 5' and/or 3' end indicate partial sequences.
- Asterisk (*) in the sequence indicate a STOP-CODON.
- Letters in red correspond to amino acids which are polymorphic in the other alleles.
- Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
- The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
- N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green
Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.
1 2 3 4 5 6 7 8 8A 9 10 11 12 13 14 15 16 17 18 19 Q Q Q V R Q S P Q S L T V W E G E T T U04312 TRAV14D-2*01 F V-REGION gDNA cag cag cag gtg aga caa agt ccc ... caa tct ctg aca gtc tgg gaa gga gag acc aca AC005402 TRAV14D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- AE007512 TRAV14D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- M88352 TRAV14D-2*02 (F) V-REGION cDNA A AC163653 TRAV14D-2*03 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --a g-- A IMGT000082 TRAV14D-2*03 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --a g-- ___________________CDR1-IMGT____________________ 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 I L N C S Y E D S T F D Y F U04312 TRAV14D-2*01 F V-REGION gDNA att ctg aac tgc agt tat gag gac agc act ... ... ... ... ... ... ttt gac tac ttc AC005402 TRAV14D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- AE007512 TRAV14D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- M88352 TRAV14D-2*02 (F) V-REGION cDNA - --- --- ... ... ... ... ... ... --- --- --- --- AC163653 TRAV14D-2*03 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- IMGT000082 TRAV14D-2*03 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- _______________C 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 P W Y R Q F P G K S P A L L I A I S L V U04312 TRAV14D-2*01 F V-REGION gDNA cca tgg tac cgg cag ttc cct ggg aaa agc cct gca ctc ctg ata gcc ata agt ttg gtg AC005402 TRAV14D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- AE007512 TRAV14D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- R E M88352 TRAV14D-2*02 (F) V-REGION cDNA --- --- --- --- --- --- --- a-- g-- --- --- --- --- --- --- --- --- --- --- --- W R E R P AC163653 TRAV14D-2*03 F V-REGION gDNA --- --- --- t-- --- --- --- a-- g-- --- --- --- --- --- --- --- --- c-- cca --- W R E R P IMGT000082 TRAV14D-2*03 F V-REGION gDNA --- --- --- t-- --- --- --- a-- g-- --- --- --- --- --- --- --- --- c-- cca --- DR2-IMGT________________ 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 S N K K E D G R F T I F U04312 TRAV14D-2*01 F V-REGION gDNA ... ... ... tcc aat aaa aag gaa gat ... ... ... ... ... gga cga ttc aca atc ttc AC005402 TRAV14D-2*01 F V-REGION gDNA ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- AE007512 TRAV14D-2*01 F V-REGION gDNA ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- M88352 TRAV14D-2*02 (F) V-REGION cDNA ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- AC163653 TRAV14D-2*03 F V-REGION gDNA ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- IMGT000082 TRAV14D-2*03 F V-REGION gDNA ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 80 81 82 83 84 84A 85 86 87 88 89 90 91 92 93 94 95 96 97 98 F N K R E K K L S L H I T D S Q P G D U04312 TRAV14D-2*01 F V-REGION gDNA ttc aat aaa agg gag ... aaa aag ctc tcc ttg cac atc aca gac tct cag cct gga gac AC005402 TRAV14D-2*01 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- AE007512 TRAV14D-2*01 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- M88352 TRAV14D-2*02 (F) V-REGION cDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- AC163653 TRAV14D-2*03 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- IMGT000082 TRAV14D-2*03 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- ___CDR3-IMGT____ 99 100 101 102 103 104 105 106 107 S A T Y F C A A S U04312 TRAV14D-2*01 F V-REGION gDNA tca gcc acc tac ttc tgt gca gca agt g AC005402 TRAV14D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- - AE007512 TRAV14D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- - M88352 TRAV14D-2*02 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- - AC163653 TRAV14D-2*03 F V-REGION gDNA --- --t --- --- --- --- --- --- --- - IMGT000082 TRAV14D-2*03 F V-REGION gDNA --- --t --- --- --- --- --- --- --- -
This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).
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