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IMGT Repertoire (IG and TR)
Alignment of alleles: house mouse (Mus musculus) TRAV15D-1_DV6D-1
When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
- Dots indicate gaps according to the IMGT unique numbering.
- Blanks at the 5' and/or 3' end indicate partial sequences.
- Asterisk (*) in the sequence indicate a STOP-CODON.
- Letters in red correspond to amino acids which are polymorphic in the other alleles.
- Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
- The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
- N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green
Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.
1 2 3 4 5 6 7 8 8A 9 10 11 12 13 14 15 16 17 18 19 A Q K V I Q V W S T P S R Q E G E E L X07878 TRAV15D-1/DV6D-1*01 F V-REGION gDNA gcc cag aaa gtg att cag gtc tgg ... tca aca cca agc agg cag gag ggc gaa gaa ctc A AC005402 TRAV15D-1/DV6D-1*02 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- g-- --- --- --- --- --- --- --- --- A AE007512 TRAV15D-1/DV6D-1*02 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- g-- --- --- --- --- --- --- --- --- A AE008684 TRAV15D-1/DV6D-1*02 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- g-- --- --- --- --- --- --- --- --- E T K X17225 TRAV15D-1/DV6D-1*03 (F) V-REGION gDNA --- g-- --- --- --- --- --- --- ... --- --- a-- --- --- --- --- --- --- a-- --- E A U66666 TRAV15D-1/DV6D-1*04 (F) V-REGION cDNA g-- --- --- --- --- --- --- ... --- --- g-- --- --- --- --- --- --- --- --- R I A U66667 TRAV15D-1/DV6D-1*05 (F) V-REGION cDNA --- --- --- --- -g- a-- --- ... --- --- g-- --- --- --- --- --- --- --- --- A U66668 TRAV15D-1/DV6D-1*06 (F) V-REGION cDNA --- --- --- --- --- --- --- ... --- --- g-- --- --- --- --- --- --- --- --- E A IMGT000082 TRAV15D-1/DV6D-1*07 F V-REGION gDNA --- g-- --- --- --- --- --- --- ... --- --- g-- --- --- --- --- --- --- --- --- ___________________CDR1-IMGT____________________ 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 T L D C S Y E T S Q V L Y H L X07878 TRAV15D-1/DV6D-1*01 F V-REGION gDNA acc ctg gac tgt tca tat gag aca agt cag gtc ... ... ... ... ... tta tac cat ctt AC005402 TRAV15D-1/DV6D-1*02 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- AE007512 TRAV15D-1/DV6D-1*02 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- AE008684 TRAV15D-1/DV6D-1*02 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- K X17225 TRAV15D-1/DV6D-1*03 (F) V-REGION gDNA --a --- --t --- --- --- a-- --- --- --- --- ... ... ... ... ... --- --- --- --- U66666 TRAV15D-1/DV6D-1*04 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- R U66667 TRAV15D-1/DV6D-1*05 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --a --- --- ... ... ... ... ... --- --- --- --- U66668 TRAV15D-1/DV6D-1*06 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- IMGT000082 TRAV15D-1/DV6D-1*07 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- _______________C 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 F W Y K H L L S G E M V F L I R Q M S S X07878 TRAV15D-1/DV6D-1*01 F V-REGION gDNA ttc tgg tac aag cac ctt ctt agt gga gag atg gtt ttc ctt att cga caa atg tct tct AC005402 TRAV15D-1/DV6D-1*02 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- AE007512 TRAV15D-1/DV6D-1*02 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- AE008684 TRAV15D-1/DV6D-1*02 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- L P X17225 TRAV15D-1/DV6D-1*03 (F) V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --g --- --- --- --- --- c-- --- T U66666 TRAV15D-1/DV6D-1*04 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -ca --- --- H T U66667 TRAV15D-1/DV6D-1*05 (F) V-REGION cDNA --- --- --- --- --- --- -a- --- --- --- --- --- --- --- --- --- --- -c- --- --- T U66668 TRAV15D-1/DV6D-1*06 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -c- --- --- T IMGT000082 TRAV15D-1/DV6D-1*07 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -c- --- --- DR2-IMGT________________ 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 S T A K E R S G R Y S V V X07878 TRAV15D-1/DV6D-1*01 F V-REGION gDNA ... ... tct act gca aaa gag agg agc ... ... ... ... ... ggc cgc tat tct gta gtc AC005402 TRAV15D-1/DV6D-1*02 F V-REGION gDNA ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- AE007512 TRAV15D-1/DV6D-1*02 F V-REGION gDNA ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- AE008684 TRAV15D-1/DV6D-1*02 F V-REGION gDNA ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- T I I D X17225 TRAV15D-1/DV6D-1*03 (F) V-REGION gDNA ... ... a-- -t- --- -t- --- --- ga- ... ... ... ... ... --- --- --- --- --- --- U66666 TRAV15D-1/DV6D-1*04 (F) V-REGION cDNA ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- U66667 TRAV15D-1/DV6D-1*05 (F) V-REGION cDNA ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- U66668 TRAV15D-1/DV6D-1*06 (F) V-REGION cDNA ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- IMGT000082 TRAV15D-1/DV6D-1*07 F V-REGION gDNA ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 80 81 82 83 84 84A 85 86 87 88 89 90 91 92 93 94 95 96 97 98 F Q K S L K S I S L V I S A L Q P D D X07878 TRAV15D-1/DV6D-1*01 F V-REGION gDNA ttc cag aaa tca ctc ... aaa tcc atc agc ctt gtc att tca gcc tta caa cca gac gat AC005402 TRAV15D-1/DV6D-1*02 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- AE007512 TRAV15D-1/DV6D-1*02 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- AE008684 TRAV15D-1/DV6D-1*02 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- R T X17225 TRAV15D-1/DV6D-1*03 (F) V-REGION gDNA --- --- --- --- -g- ... --- --- --- --- --- --- --- --- a-- --- --- --- --- --- U66666 TRAV15D-1/DV6D-1*04 (F) V-REGION cDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --t --- U66667 TRAV15D-1/DV6D-1*05 (F) V-REGION cDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- U66668 TRAV15D-1/DV6D-1*06 (F) V-REGION cDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- I IMGT000082 TRAV15D-1/DV6D-1*07 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- a-- --- --- --t --- --- --- --- --- _______CDR3-IMGT____ 99 100 101 102 103 104 105 106 107 108 109 S G K Y F C A L W E L X07878 TRAV15D-1/DV6D-1*01 F V-REGION gDNA tcg gga aag tat ttc tgt gct ctc tgg gag ctc AC005402 TRAV15D-1/DV6D-1*02 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --a g AE007512 TRAV15D-1/DV6D-1*02 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --a g AE008684 TRAV15D-1/DV6D-1*02 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --a g X17225 TRAV15D-1/DV6D-1*03 (F) V-REGION gDNA --- --- --- --- --- --- --- --- --- --- U66666 TRAV15D-1/DV6D-1*04 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- --- -- U66667 TRAV15D-1/DV6D-1*05 (F) V-REGION cDNA --a --- --- --- --- --- --- --- --- --- -- U66668 TRAV15D-1/DV6D-1*06 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- --- -- IMGT000082 TRAV15D-1/DV6D-1*07 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --g g
This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).
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