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IMGT Repertoire (IG and TR)
Alignment of alleles: house mouse (Mus musculus) TRAV15D-2_DV6D-2
When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
- Dots indicate gaps according to the IMGT unique numbering.
- Blanks at the 5' and/or 3' end indicate partial sequences.
- Asterisk (*) in the sequence indicate a STOP-CODON.
- Letters in red correspond to amino acids which are polymorphic in the other alleles.
- Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
- The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
- N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green
Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.
1 2 3 4 5 6 7 8 8A 9 10 11 12 13 14 15 16 17 18 19 A Q R V T Q V Q P T G S S Q W G E E V AC005402 TRAV15D-2/DV6D-2*01 F V-REGION gDNA gcc cag aga gtg act cag gtc cag ... cca aca ggc agc agt cag tgg gga gaa gaa gtc AE007512 TRAV15D-2/DV6D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- AE008684 TRAV15D-2/DV6D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- A AJ271435 TRAV15D-2/DV6D-2*02 (F) V-REGION cDNA --- --- --- --- --- --- --- --- ... --- --- -cg --- --- --- --- --- --- --- --- AC163653 TRAV15D-2/DV6D-2*03 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- AF085009 TRAV15D-2/DV6D-2*03 F V-REGION cDNA --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- IMGT000082 TRAV15D-2/DV6D-2*03 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- S AF085006 TRAV15D-2/DV6D-2*04 (F) V-REGION cDNA --- --- --- --- --- --- --- ... t-- --- --- --- --- --- --- --- --- --- --- S AF085008 TRAV15D-2/DV6D-2*05 (F) V-REGION cDNA --- --- --- --- --- --- --- ... t-- --- --- --- --- --- --- --- --- --- --- ___________________CDR1-IMGT____________________ 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 T L D C S Y E T S E Y F Y C I AC005402 TRAV15D-2/DV6D-2*01 F V-REGION gDNA act ctg gac tgt tca tat gag aca agt gaa tac ... ... ... ... ... ttc tac tgt att AE007512 TRAV15D-2/DV6D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- AE008684 TRAV15D-2/DV6D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- R AJ271435 TRAV15D-2/DV6D-2*02 (F) V-REGION cDNA --c --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- c-- --- R AC163653 TRAV15D-2/DV6D-2*03 F V-REGION gDNA --c --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- c-- --- R AF085009 TRAV15D-2/DV6D-2*03 F V-REGION cDNA --c --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- c-- --- R IMGT000082 TRAV15D-2/DV6D-2*03 F V-REGION gDNA --c --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- c-- --- R AF085006 TRAV15D-2/DV6D-2*04 (F) V-REGION cDNA --c --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... --- --- c-- --- S L AF085008 TRAV15D-2/DV6D-2*05 (F) V-REGION cDNA --c --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... -c- --- ct- --- _______________C 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 I W Y R Q L F S G E M V F L I Y Q T S F AC005402 TRAV15D-2/DV6D-2*01 F V-REGION gDNA att tgg tac agg cag ctt ttt agt gga gag atg gtt ttc ctt att tac caa act tcc ttt AE007512 TRAV15D-2/DV6D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- AE008684 TRAV15D-2/DV6D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- F P AJ271435 TRAV15D-2/DV6D-2*02 (F) V-REGION cDNA t-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- c-- --t --- F P AC163653 TRAV15D-2/DV6D-2*03 F V-REGION gDNA t-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- c-- --t --- F P AF085009 TRAV15D-2/DV6D-2*03 F V-REGION cDNA t-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- c-- --t --- F P IMGT000082 TRAV15D-2/DV6D-2*03 F V-REGION gDNA t-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- c-- --t --- AF085006 TRAV15D-2/DV6D-2*04 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- L P AF085008 TRAV15D-2/DV6D-2*05 (F) V-REGION cDNA c-- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- c-- --t --- DR2-IMGT________________ 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 D T Q N Q R N G R Y S V V AC005402 TRAV15D-2/DV6D-2*01 F V-REGION gDNA ... ... gat act cag aac cag agg aac ... ... ... ... ... ggc cgc tac tct gta gtc AE007512 TRAV15D-2/DV6D-2*01 F V-REGION gDNA ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- AE008684 TRAV15D-2/DV6D-2*01 F V-REGION gDNA ... ... --- --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- S AJ271435 TRAV15D-2/DV6D-2*02 (F) V-REGION cDNA ... ... --c --- --- --- --- --- -g- ... ... ... ... ... --- --- --- --- --- --- S AC163653 TRAV15D-2/DV6D-2*03 F V-REGION gDNA ... ... --c --- --- --- --- --- -g- ... ... ... ... ... --- --- --- --- --- --- S AF085009 TRAV15D-2/DV6D-2*03 F V-REGION cDNA ... ... --c --- --- --- --- --- -g- ... ... ... ... ... --- --- --- --- --- --- S IMGT000082 TRAV15D-2/DV6D-2*03 F V-REGION gDNA ... ... --c --- --- --- --- --- -g- ... ... ... ... ... --- --- --- --- --- --- S AF085006 TRAV15D-2/DV6D-2*04 (F) V-REGION cDNA ... ... --- --- --- --- --- --- -g- ... ... ... ... ... --- --- --- --- --- --- S AF085008 TRAV15D-2/DV6D-2*05 (F) V-REGION cDNA ... ... --- --- --- --- --- --- -g- ... ... ... ... ... --- --- --- --- --- --- 80 81 82 83 84 84A 85 86 87 88 89 90 91 92 93 94 95 96 97 98 F Q K S L K S I S L V I S A S Q P E D AC005402 TRAV15D-2/DV6D-2*01 F V-REGION gDNA ttc cag aaa tca ctc ... aag tcc atc agc ctt gtc att tca gcc tca cag cca gag gat AE007512 TRAV15D-2/DV6D-2*01 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- AE008684 TRAV15D-2/DV6D-2*01 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- F AJ271435 TRAV15D-2/DV6D-2*02 (F) V-REGION cDNA --- --- --- --- t-- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- F AC163653 TRAV15D-2/DV6D-2*03 F V-REGION gDNA --- --- --- --- t-- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- F AF085009 TRAV15D-2/DV6D-2*03 F V-REGION cDNA --- --- --- --- t-- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- F IMGT000082 TRAV15D-2/DV6D-2*03 F V-REGION gDNA --- --- --- --- t-- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- AF085006 TRAV15D-2/DV6D-2*04 (F) V-REGION cDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- F AF085008 TRAV15D-2/DV6D-2*05 (F) V-REGION cDNA --- --- --- --- t-- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- _______CDR3-IMGT________ 99 100 101 102 103 104 105 106 107 108 109 S G T Y F C A L S E L AC005402 TRAV15D-2/DV6D-2*01 F V-REGION gDNA tca ggg acg tac ttc tgc gct ctc tcg gaa ctg a AE007512 TRAV15D-2/DV6D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- - AE008684 TRAV15D-2/DV6D-2*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- - AJ271435 TRAV15D-2/DV6D-2*02 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- --- - AC163653 TRAV15D-2/DV6D-2*03 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- - AF085009 TRAV15D-2/DV6D-2*03 F V-REGION cDNA --- --- --- --- --- --- --- --- --- --- -- IMGT000082 TRAV15D-2/DV6D-2*03 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- - AF085006 TRAV15D-2/DV6D-2*04 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- --- -- AF085008 TRAV15D-2/DV6D-2*05 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- --- --
This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).
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