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IMGT Repertoire (IG and TR)
Alignment of alleles: house mouse (Mus musculus) TRAV4D-3
When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
- Dots indicate gaps according to the IMGT unique numbering.
- Blanks at the 5' and/or 3' end indicate partial sequences.
- Asterisk (*) in the sequence indicate a STOP-CODON.
- Letters in red correspond to amino acids which are polymorphic in the other alleles.
- Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
- The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
- N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green
Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.
1 2 3 4 5 6 7 8 8A 9 10 11 12 13 14 15 16 17 18 19 G D K V K Q S P S A L S L Q E G T N S AC005402 TRAV4D-3*01 F V-REGION gDNA gga gat aag gtg aag caa agt ccc ... tca gcg ctg agt ctc caa gag gga acc aat tct AE007512 TRAV4D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- AE008684 TRAV4D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- A M73265 TRAV4D-3*02 (F) V-REGION cDNA --- --- --- --- --- --- --- g-- ... --- --- --- --- --- --- --- --- --- --- --- M87844 TRAV4D-3*03 (F) V-REGION gDNA --- --- --- --- --a --- --- --- ... --- --- --- --- --- --- --a --- --- --- --- S81113 TRAV4D-3*04 (F) V-REGION cDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --a --- --- --- --- IMGT000082 TRAV4D-3*06 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- ___________________CDR1-IMGT____________________ 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 A L R C N F S I A A T T V AC005402 TRAV4D-3*01 F V-REGION gDNA gct ctg aga tgc aat ttt tct atc gcc gcg ... ... ... ... ... ... ... aca act gtg AE007512 TRAV4D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- AE008684 TRAV4D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- M73265 TRAV4D-3*02 (F) V-REGION cDNA --- --- --g --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- M87844 TRAV4D-3*03 (F) V-REGION gDNA --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- S81113 TRAV4D-3*04 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... ... --- --- --- IMGT000082 TRAV4D-3*06 F V-REGION gDNA --- --- --- --- --- --- --- --- --t --- ... ... ... ... ... ... ... --- --- --- _______________C 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 Q W F L Q N P R G S L I N L F Y L V P AC005402 TRAV4D-3*01 F V-REGION gDNA cag tgg ttc cta cag aat ccc agg ggc agc ctc atc aat ctt ttt tac ctg gtt cca ... AE007512 TRAV4D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... AE008684 TRAV4D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... M73265 TRAV4D-3*02 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... M87844 TRAV4D-3*03 (F) V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... M S81113 TRAV4D-3*04 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- --- --- --g --- --- --- --- --- --- --- ... M IMGT000082 TRAV4D-3*06 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --g --- --- --- --- --- --g --- ... DR2-IMGT________________ 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 G T K E N G R L K S T AC005402 TRAV4D-3*01 F V-REGION gDNA ... ... ... ... gga aca aag gag aat ... ... ... ... ... ggg agg tta aag tca aca AE007512 TRAV4D-3*01 F V-REGION gDNA ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- AE008684 TRAV4D-3*01 F V-REGION gDNA ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- M73265 TRAV4D-3*02 (F) V-REGION cDNA ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- A M87844 TRAV4D-3*03 (F) V-REGION gDNA ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- g-- S81113 TRAV4D-3*04 (F) V-REGION cDNA ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- A IMGT000082 TRAV4D-3*06 F V-REGION gDNA ... ... ... ... --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- g-- 80 81 82 83 84 84A 85 86 87 88 89 90 91 92 93 94 95 96 97 98 F N S K E S Y S T L H I R D A Q L E D AC005402 TRAV4D-3*01 F V-REGION gDNA ttc aat tct aag gag ... agc tac agc acc ctg cac atc agg gat gcc cag ctg gag gac AE007512 TRAV4D-3*01 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- AE008684 TRAV4D-3*01 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- P M73265 TRAV4D-3*02 (F) V-REGION cDNA --- --- --- --- --- ... --- --- --- --- -c- --- --- --- --- --- --- --- --- --- D M87844 TRAV4D-3*03 (F) V-REGION gDNA --- g-- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- S81113 TRAV4D-3*04 (F) V-REGION cDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --a --- D IMGT000082 TRAV4D-3*06 F V-REGION gDNA --t g-- --- --- --- ... --- --- --- --- --- --- --t --- --- --- --- --- --- --- ___CDR3-IMGT____ 99 100 101 102 103 104 105 106 107 S G T Y F C A A E AC005402 TRAV4D-3*01 F V-REGION gDNA tca ggc act tac ttc tgt gct gct gag g AE007512 TRAV4D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- - AE008684 TRAV4D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- - M73265 TRAV4D-3*02 (F) V-REGION cDNA --- --- --- --- --- --- --- --- -- M87844 TRAV4D-3*03 (F) V-REGION gDNA --- --- --- --- --- --- --- --- --- - S81113 TRAV4D-3*04 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- - IMGT000082 TRAV4D-3*06 F V-REGION gDNA --- --- --- --- --- --- --- --- --- -
This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).
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