IMGT Repertoire (IG and TR)
Alignment of alleles: house mouse (Mus musculus) TRAV7-5
When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
- Dots indicate gaps according to the IMGT unique numbering.
- Blanks at the 5' and/or 3' end indicate partial sequences.
- Asterisk (*) in the sequence indicate a STOP-CODON.
- Letters in red correspond to amino acids which are polymorphic in the other alleles.
- Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
- The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
- N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green
Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.
1 2 3 4 5 6 7 8 8A 9 10 11 12 13 14 15 16 17 18 19 Q Q K V Q Q S P E S L T V S E G A M A AC004406 TRAV7-5*01 F V-REGION gDNA cag cag aag gtg cag cag agc cca ... gaa tcc ctc act gtc tca gag gga gcc atg gcc AE007512 TRAV7-5*01 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- AE008685 TRAV7-5*01 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- X55825 TRAV7-5*02 (F) V-REGION cDNA IMGT000082 TRAV7-5*03 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- AF034160 TRAV7-5*03 F V-REGION cDNA ___________________CDR1-IMGT____________________ 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 S L N C T F S D G T S D N F AC004406 TRAV7-5*01 F V-REGION gDNA tct ctc aac tgc act ttc agt gat ggt act ... ... ... ... ... ... tct gac aac ttc AE007512 TRAV7-5*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- AE008685 TRAV7-5*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- X55825 TRAV7-5*02 (F) V-REGION cDNA N IMGT000082 TRAV7-5*03 F V-REGION gDNA --- --- --- --- --g --- --- --- --- --- ... ... ... ... ... ... --- a-- --- --- AF034160 TRAV7-5*03 F V-REGION cDNA _______________C 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 R W Y R Q H S G K G L E V L V S I F S AC004406 TRAV7-5*01 F V-REGION gDNA agg tgg tac aga cag cat tct ggg aaa ggc ctt gag gtg cta gtg tcc atc ttc tct ... AE007512 TRAV7-5*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... AE008685 TRAV7-5*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... A M X55825 TRAV7-5*02 (F) V-REGION cDNA -ca --g a-- --- --- --- --- ... A IMGT000082 TRAV7-5*03 F V-REGION gDNA --- --- --- --- --- --- --- -c- --- --- --- --- --- --- --- --- --- --- --- ... A AF034160 TRAV7-5*03 F V-REGION cDNA --- --- -c- --- --- --- --- --- --- --- --- --- --- --- ... DR2-IMGT________________ 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 D G E K E E G R F T A H AC004406 TRAV7-5*01 F V-REGION gDNA ... ... ... gat ggt gaa aag gaa gaa ... ... ... ... ... ggc aga ttt aca gct cac AE007512 TRAV7-5*01 F V-REGION gDNA ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- AE008685 TRAV7-5*01 F V-REGION gDNA ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- Q X55825 TRAV7-5*02 (F) V-REGION cDNA ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --g IMGT000082 TRAV7-5*03 F V-REGION gDNA ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- AF034160 TRAV7-5*03 F V-REGION cDNA ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 80 81 82 83 84 84A 85 86 87 88 89 90 91 92 93 94 95 96 97 98 L N R A S L H V S L H I R E P Q P S D AC004406 TRAV7-5*01 F V-REGION gDNA ctc aat aga gcc agc ... ctg cat gtt tcc cta cac atc aga gag ccg caa ccc agt gac AE007512 TRAV7-5*01 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- AE008685 TRAV7-5*01 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- V X55825 TRAV7-5*02 (F) V-REGION cDNA g-- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- N IMGT000082 TRAV7-5*03 F V-REGION gDNA --- --- --- --- -a- ... t-- --- --- --- --- --- --- --- --a --a --- --- --- --- N AF034160 TRAV7-5*03 F V-REGION cDNA --- --- --- --- -a- ... t-- --- --- --- --- --- --- --- --a --a --- --- --- --- ___CDR3-IMGT____ 99 100 101 102 103 104 105 106 107 S A V Y L C A M S AC004406 TRAV7-5*01 F V-REGION gDNA tct gct gtc tac ctc tgt gca atg agc a AE007512 TRAV7-5*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- - AE008685 TRAV7-5*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- - X55825 TRAV7-5*02 (F) V-REGION cDNA --- --- --- --- --- --- --- --- -- V IMGT000082 TRAV7-5*03 F V-REGION gDNA --- --- --- --- --- --- --- g-- --- - V AF034160 TRAV7-5*03 F V-REGION cDNA --- --- --- --- --- --- --- g-- --- -
This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).
IMGT Home page |
IMGT Repertoire (IG and TR) |
IMGT Repertoire (MH) |
IMGT Repertoire (RPI) |
IMGT Index |
IMGT Scientific chart |
IMGT Education |
IMGT Latest news 
© Copyright 1995-2026 IMGT®, the international ImMunoGeneTics information system® | Terms of use | About us | Contact us | Citing IMGT