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IMGT Repertoire (IG and TR)
Alignment of alleles: house mouse (Mus musculus) TRAV7D-3
When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
- Dots indicate gaps according to the IMGT unique numbering.
- Blanks at the 5' and/or 3' end indicate partial sequences.
- Asterisk (*) in the sequence indicate a STOP-CODON.
- Letters in red correspond to amino acids which are polymorphic in the other alleles.
- Colours are according to Color menu for mutations, Color menu for sequence alignments and Color menu for splicing types.
- The nucleotide (s) in bold and colored in purple (splicing frame 1) or green (splicing frame 2) from the DONOR splice site are added at the beginning of the following exon in order to obtain and to complete the first CODON of the DOMAIN or REGION resulting from the splicing site. These first CODONs are in bold and colored in purple (splicing frame 1) or green (splicing frame 2)
- N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown in green
Clicking on the allele name gives access to the IMGT/GENE-DB.
Clicking on the accession number gives access to the IMGT/LIGM-DB.
1 2 3 4 5 6 7 8 8A 9 10 11 12 13 14 15 16 17 18 19 Q Q K V Q Q S P E S L I V P E G A M T X02833 TRAV7D-3*01 F V-REGION gDNA cag cag aag gtg cag cag agc cca ... gaa tcc ctc att gtc cca gag gga gcc atg act AC005403 TRAV7D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- AE007512 TRAV7D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- AE008683 TRAV7D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- M26423 TRAV7D-3*02 (F) V-REGION cDNA IMGT000082 TRAV7D-3*03 F V-REGION gDNA --- --- --- --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --c ___________________CDR1-IMGT____________________ 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 S L N C T F S D S A S Q Y F X02833 TRAV7D-3*01 F V-REGION gDNA tct ctc aac tgc act ttc agc gac agt gct ... ... ... ... ... ... tct cag tat ttt AC005403 TRAV7D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- AE007512 TRAV7D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- AE008683 TRAV7D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- M26423 TRAV7D-3*02 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- IMGT000082 TRAV7D-3*03 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ... --- --- --- --- _______________C 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 A W Y R Q H S G K A P K A L M S I F S X02833 TRAV7D-3*01 F V-REGION gDNA gca tgg tac aga cag cat tct ggg aaa gcc ccc aag gca ctg atg tcc atc ttc tcc ... AC005403 TRAV7D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... AE007512 TRAV7D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... AE008683 TRAV7D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... T M26423 TRAV7D-3*02 (F) V-REGION cDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- -c- --- --- --- --- ... IMGT000082 TRAV7D-3*03 F V-REGION gDNA --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... DR2-IMGT________________ 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 N G E K E E G R F T I H X02833 TRAV7D-3*01 F V-REGION gDNA ... ... ... aat ggt gaa aaa gaa gaa ... ... ... ... ... ggc aga ttc aca att cac AC005403 TRAV7D-3*01 F V-REGION gDNA ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- AE007512 TRAV7D-3*01 F V-REGION gDNA ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- AE008683 TRAV7D-3*01 F V-REGION gDNA ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- M26423 TRAV7D-3*02 (F) V-REGION cDNA ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- IMGT000082 TRAV7D-3*03 F V-REGION gDNA ... ... ... --- --- --- --- --- --- ... ... ... ... ... --- --- --- --- --- --- 80 81 82 83 84 84A 85 86 87 88 89 90 91 92 93 94 95 96 97 98 L N K A S L H F S L H I R D S Q P S D X02833 TRAV7D-3*01 F V-REGION gDNA ctc aat aaa gcc agt ... ctg cat ttc tcg cta cac atc aga gac tcc cag ccc agt gac AC005403 TRAV7D-3*01 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- AE007512 TRAV7D-3*01 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- AE008683 TRAV7D-3*01 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- M26423 TRAV7D-3*02 (F) V-REGION cDNA --- --- --- --- --- ... --- --- --- --c --g --- --- --- --- --- --- --- --- --- IMGT000082 TRAV7D-3*03 F V-REGION gDNA --- --- --- --- --- ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- ___CDR3-IMGT 99 100 101 102 103 104 105 106 107 S A L Y L C A V S X02833 TRAV7D-3*01 F V-REGION gDNA tct gct ctc tac ctc tgt gca gtg agc AC005403 TRAV7D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- a AE007512 TRAV7D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- AE008683 TRAV7D-3*01 F V-REGION gDNA --- --- --- --- --- --- --- --- --- M26423 TRAV7D-3*02 (F) V-REGION cDNA --- --- --- --- --- --- --- --- - IMGT000082 TRAV7D-3*03 F V-REGION gDNA --- --- --- --- --- --- --- --- --- a
This alignment of allele is generated by IMGT/OutilAllele (Mehdi Yousfi, Chantal Ginestoux, Perrine Pégorier and Patrice Duroux).
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