Alignment of alleles: Goat (Capra hircus) TRAV5S3

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

N (Asn, asparagine) of potential N-glycosylation sites (NXS/T, where X is different from P), (N-linked glycosylation) is shown is green (site is underlined in CHS and in pages edited before 14/10/2009).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 G   N   K   V   E   Q   S   P   S   T   L   S   V   Q   E   G   N   G   S   V
  AF318509,TRAV5S3*01           GGG AAC AAA GTG GAG CAG AGT CCT TCT ACC CTG AGT GTC CAG GAG GGA AAC GGC TCT GTT

                                                        ___________________CDR1-IMGT____________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 I   T   C   T   Y   T   D   T   A   S   D   Y                           F   P
  AF318509,TRAV5S3*01           ATC ACC TGC ACT TAT ACA GAC ACA GCT TCA GAC TAC ... ... ... ... ... ... TTC CCT

                                                                                            _______________CDR2-
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60 
                                 W   Y   K   Q   E   P   G   K   G   P   Q   L   L   I   A   I   R   S   N   M
  AF318509,TRAV5S3*01           TGG TAT AAG CAA GAA CCT GGG AAG GGT CCC CAG CTC CTA ATA GCT ATT CGT TCA AAT ATG

                                IMGT________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 G                   E   K   K   D   Q                               R   L   T
  AF318509,TRAV5S3*01           GGT ... ... ... ... GAA AAA AAA GAC CAG ... ... ... ... ... ... ... AGA CTG ACT

                                 81  82  83  84 84A 84B 84C  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 V   L   L   N   K   T   A   K   H   L   S   L   H   I   A   T   I   Q   S   G   D   S   A
  AF318509,TRAV5S3*01           GTT TTA TTG AAT AAG ACT GCC AAA CAT CTC TCC CTG CAC ATC GCA ACC ATC CAG TCT GGG GAC TCA GCT

                                                _CDR3-IMGT_
                                101 102 103 104 105 106 107 
                                 V   Y   F   C   A   E   D
  AF318509,TRAV5S3*01           GTC TAC TTC TGT GCG GAA GAC #c
#c : rearranged cDNA

This alignment has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 26/09/2002
Author: Géraldine Folch