Alignment of alleles: Goldfish (Carassius auratus) IGHV1S1

When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters. These polymorphic mutations are reported in Tables of alleles.
Dashes indicate identical nucleotides. Dots indicate gaps according to the IMGT unique numbering. Blanks indicate partial sequences (blanks at the 5' and/or 3' end).

                                  1   2   3   4   5   6   7   8   9  10  11  12  13  14  15  16  17  18  19  20
                                 Q   V   Q   L   V   E   S   G   G       D   V   K   K   P   G   D   S   L   R
  J03616  ,IGHV1S1*01           CAG GTG CAG CTG GTG GAG TCC GGA GGG ... GAT GTG AAG AAG CCC GGA GAC TCT CTG CGC

                                                        _________________CDR1-IMGT______________________
                                 21  22  23  24  25  26  27  28  29  30  31  32  33  34  35  36  37  38  39  40
                                 L   S   C   K   A   S   G   Y   T   F   S   G   Y   T                   M   Y
  J03616  ,IGHV1S1*01           CTC TCC TGC AAA GCC TCC GGC TAC ACC TTC AGC GGC TAC ACT ... ... ... ... ATG TAC

                                                                                            _____________CDR2-IM
                                 41  42  43  44  45  46  47  48  49  50  51  52  53  54  55  56  57  58  59  60
                                 W   V   R   Q   A   P   G   K   G   L   E   W   V   S   R   I   Y   D   D   G
  J03616  ,IGHV1S1*01           TGG GTC CGC CAG GCC CCC GGG AAG GGG CTG GAG TGG GTC TCA CGT ATT TAC GAT GAC GGG

                                GT__________________
                                 61  62  63  64  65  66  67  68  69  70  71  72  73  74  75  76  77  78  79  80
                                 S   D   V           S   Y   A   D   T   V   K       G   R   F   T   I   S   R
  J03616  ,IGHV1S1*01           AGT GAT GTG ... ... TCC TAC GCC GAC ACA GTG AAA ... GGT CGA TTC ACC ATC TCC AGG


                                 81  82  83  84  85  86  87  88  89  90  91  92  93  94  95  96  97  98  99 100
                                 D   N   A   K   N   L   L   Y   L   Q   M   S   N   L   K   P   E   D   T   G
  J03616  ,IGHV1S1*01           GAT AAT GCC AAG AAC CTG CTT TAT CTG CAA ATG AGC AAT TTG AAG CCT GAG GAC ACC GGC

                                                CDR3-IMGT
                                101 102 103 104 105 106
                                 R   Y   Y   C   A   R
  J03616  ,IGHV1S1*01           CGC TAT TAC TGT GCG AGA

This alignement has been generated with the IMGT/AlleleAlign tool developed by Mehdi Yousfi (31/07/2001)

Created: 02/07/2003
Author: Nathalie Bosc