Assignment of rearranged cDNAs and gDNAs to germline genes: Mouse (Mus musculus) TRAV

In this table are listed representative rearranged complementary DNAs (cDNAs) and genomic DNAs (gDNAs).

Rearranged cDNAs (#c) and gDNAs (#g) TRAV sequences have been assigned to IMGT TRAV genes and alleles as described in Germline gene tables, Alignments of alleles and Tables of alleles. Assignments were performed using IMGT/V-QUEST.

TRAV
gene name
Reference sequences
Rearranged cDNAs and gDNAs
CDR lengths
JUNCTION (1)
Allele name
Accession
number
Clone name
Strain
Accession numbers
TRAV1
TRAV1*01
AF259072
BL4L-23
C57BL/6
D12895 [62](2)p5'#c
[6.5.10]
+
TRAV1*02
M22604 #g
1.4.A10
B10.A
M22604 [19] #g
[6.5.14]
+
TRAV2
TRAV2*01
AF259071
BDFL1.4.3
C57BL/6 x DBA/2 (F1)
X03668 [5]#g
[7.4.14]
+
BDFL alpha I
C57BL/6 x DBA/2 (F1)
X03760 [5]#c
[7.4.14]
+
TRAV3-1
TRAV3-1*02
AJ311366 #c
MA25
C3H
AJ311366 [30]#c
[6.6.11]
+
TRAV3-3
TRAV3-3*01
AC003997
TA80
C57BL/Ka
X02939 [2]p5'#c
[6.6.x]
-
MDA
BALB/c
X02967 [3]#c
[6.6.10]
+
BN1-5
C57BL/6 x CBA (F1)
AF296659 [104]#c
[6.6.10]
+
TRAV3-3*02
X02933 #c
TA72
C57BL/ka
X02933 [2] #c
[6.6.11]
+
TRAV4D-3
TRAV4D-3*01
AC005402
CD3+,4+,5+,8-
BALB/c
X67127 [63]#c
[5.4.12]
+
TRAV4D-3*02
M22603 #g
1.5.A10
B10.A
M22603 [19]#g
[5.4.12]
+
pXTL66
C57BL/10
D16599 [64]p5'#c
[x.4.11]
+
pXTL67
C57BL/10
D16600 [64]p5'#c
[x.x.11]
+
TRAV4D-3*03
M73265 #c DF6 A/J M73265 [48]#c [5.4.x] n.d.
TRAV4D-3*04
M87844 #g BO4H9.1 C57BL/6 M87844 [52]#g [5.4.11] +
BO3H-25 C57BL/6 M87846 [52]#c [5.4.11] +
TRAV4D-3*05
S81113 #c 231F1   S81113 [83]#c [5.4.12] +
TRAV4D-3*06
U63776 #g V11PCC-19 B10.A U63776 [84](3)#g [5.4.x]  
TRAV4D-4
TRAV4D-4*01
AC005855
4E3
SJL
U07659 [66]#c
[5.4.11]
+
TRAV4D-4*02
X02968 #c 2B4 B10.A X02968 [3]#c [5.4.13] +
2B4
B10.A
M73261 [48]#c
[5.4.13]
+
2H10
B10.A
M73262 [48]#c
[5.4.12]
+
BL4L-30
C57BL/6
D12897 [62]p5'#c
[x.4.12]
+
SB14-11
C57BL/6
D45219 [73]p5'#c
[5.4.12]
+
 
B10.A
U63774 [84](4)#g
[5.4.x]
 
TRAV4D-4*03
X03860#c
B10
B10.A
X03860 [6]#c
[5.4.12]
+
CF.6
B10.A
X03858[6]#c
[5.4.11]
+
5C.C7
B10.A
X03859[6]#c
[5.4.12]
+
4.C3
B10.A
X03861[6]#c
[5.4.12]
+
TRAV4D-4*04
M73264 #c
 
DBA/2
M73264 [48]p5'#c
[5.4.x]
 
TRAV4D-4*05
U63758 #g
 
B10.A
U63758 [84](3)#g
[5.4.x]
 
 
B10.A
U63759 [84](3)#g
[5.4.x]
 
 
B10.A
U63760 [84](3)#g
[5.4.x]
 
 
B10.A
U63761 [84](3)#g
[5.4.x]
 
 
B10.A
U63762 [84](3)#g
[5.4.x]
 
 
B10.A
U63763 [84](3)#g
[5.4.x]
 
 
B10.A
U63764 [84](3)#g
[5.4.x]
 
 
B10.A
U63765 [84](3)#g
[5.4.x]
 
 
B10.A
U63766 [84](3)#g
[5.4.x]
 
 
B10.A
U63767 [84](3)#g
[5.4.x]
 
 
B10.A
U63768 [84](3)#g
[5.4.x]
 
 
B10.A
U63769 [84](3)#g
[5.4.x]
 
 
B10.A
U63770 [84](3)#g
[5.4.x]
 
 
B10.A
U63771 [84](3)#g
[5.4.x]
 
 
B10.A
U63772 [84](3)#g
[5.4.x]
 
 
B10.A
U63773 [84](3)#g
[5.4.x]
 
 
B10.A
U63775 [84](3)#g
[5.4.x]
 
 
B10.A
U63777 [84](3)#g
[5.4.x]
 
TRAV4-2
TRAV4-2*02
M87848 #c bm2T3.1 C57BL/6 M87848 [52]#c [5.4.12] +
bm4T6.2
C56BL/6
M87850 [52]#c
[5.4.12]
+
TRAV4-3
TRAV4-3*02
M27351 #c NA3(V2B4) BALB/c nu/nu M27351 [10]#c [5.4.12] +
TRAV4-4/DV10
TRAV4-4/DV10*01
AC004102 G8 BALB/c nu/nu X14095 [24]p5'#c [x.4.19] +
TA80
B10.A
M55635 [53]#c
[5.4.11]
+
 
A/J
M73263 [48]#c
[5.4.x]
 
qCII85.33
DBA/1LacJ
L47342 [72]#g
[5.4.12]
+
TRAV5-1
TRAV5-1*01
AF259071 pXTL63 C57BL/10 D16596 [64](5)p5'#c [x.x.14] +
TRAV5D-4
TRAV5D-4*01
AC005855   BALB/c M38681 [23]#c [6.6.x]  
TRAV5D-4*02
U07877 #c L-3A SWR x NZB (F1) U07877 [67]#c [6.6.x]  
TRAV5D-4*03
U07876 #c H16G10 SWR x NZB (F1) U07876 [67]p5'#c [6.6.x]  
TRAV5D-4*04
U80816 #c H-2I-A NOD U80816 [89]#c [6.6.10] +
TRAV5-4
TRAV5-4*01
AC003995   BALB/c AJ311367 [23](6)p3'#c [6.6.x]  
TRAV6-1
TRAV6-1*01
AF259071
pXTL64
C57BL/10
D16597 [64](7)p5'#c
[x.x.x]
-
TRAV6-1*02
X14387 #c
F5
C57BL/6
X14387 [33]#c
[6.6.12]
+
TRAV6-2
TRAV6-2*02
X03669 #g
BDFLII
C57BL/6 x DBA/2 (F1)
X03669 [5]#g
[6.6.x]
-
TRAV6-2*03
U21455 #c
SB2-28a
BALB/c
U21455 [74]p5'#c
[6.6.9]
+
TRAV6D-3
TRAV6D-3*01
AF259073
 
 
M61133 [46]#c
[6.6.13]
+
TRAV6D-3*02
M16675 #c
DA.33.C2
C57BL/6
M16675 [13]#c
[6.6.14]
+
TRAV6D-5
TRAV6D-5*01
AC003994
TA39
C57BL/Ka
X02969 [3]#c
[6.6.9]
+
TA28
C57BL/Ka
X02931 [2]p5'#c
[6.6.11]
+
TRAV6D-6
TRAV6D-6*01
AC004101
a2
 
U64438 [86]#c
[8.6.x]
n.d.
A26
BALB/c
M22660 [26]#c
[8.6.13]
+
TRAV6D-6*02
X05187
SB14-31
C57BL/6
D12893 [62]p5'#c
[8.6.13]
+
TRAV6D-6*03
M16676 #c
BB1.D5
C57BL/10
M16676 [13]#c
[8.6.10]
+
TRAV6D-6*04
U21397 #c
S102-26a
BALB/c
U21397 [75]p5'#c
[8.6.11]
+
TRAV6D-7
TRAV6D-7*02
M21205 #c
PJR-25
PL x SJL (F1)
M21205 [18]#c
[6.6.x]
 
MT1-14
BALB/c
M34198 [41]#c
[6.6.10]
+
MT1-27
BALB/c
M34200 [41]#c
[6.6.9]
+
S519-12a
BALB/c
U21421 [75]p5'#c
[6.6.11]
+
TRAV6D-7*03
X55823 #c
8.2
 
X55823 [44]p5'#c
[6.6.11]
+
TRAV6-3
TRAV6-3*01
AC004407
S519-5a
BALB/c
U21423 [75]p5'(8)#c
[x.x.13]
+
TRAV6-4
TRAV6-4*01
AC004407
Hb(64-76)/I-Ek
CE/J
U46580 [56]#c
[6.6.13]
+
5B6
SJL
U07658 [66]#c
[6.6.11]
+
BST1-8.18
SJL
U06124 [50]p5'#c
[x.6.7]
+
TRAV6-4*02
M84653 #c
 
BALB/c
M84653 [55]#c
[6.6.x]
n.d.
TRAV6-5
TRAV6-5*01
AC004405
S515-7a
BALB/c
U21419 [75]p5'#c
[x.6.11]
+
TRAV6-5*02
M34202 #c
MT1-6
BALB/c
M34202 [41]p5'#c
[6.6.13]
+
V2.1
BALB/c
M34204 [41]p5'#c
[x.x.10]
+
TRAV6-5*03
U05046 #c
2-2-G4
BALB/cJ
U05046 [85]#c
[6.6.10]
+
TRAV6-6
TRAV6-6*01
AC005240
 
BALB/c
M38678 [23]#c
[8.6.x]
 
7H5
BALB/c
M98566 [58]p5'#c
[x.6.12]
+
TRAV6-6*02
U21448 #c
S630-62a1
BALB/c
U21448 [74]p5'#c
[8.6.14]
+
TRAV6-6*03
U90513 #c
 
C57BL/6
U90513 [91]#c
[8.6.x]
 
TRAV6-7/DV9
TRAV6-7/DV9*01
AC003995
112-2
C57BL/6
X05188 [15]p5'#c
[x.x.11]
+
M14T-6
BALB/c
M33588 [42]p5'#c
[x.x.13]
+
HK8.3-6F8
 
Y17473 [98]p5'#c
[x.6.11]
+
TRAV6-7/DV9*02
X02932 #c
TA65
C57BL/Ka
X02932 [2]#c
[6.6.12]
+
TRAV6-7/DV9*03
M21863 #c
PL214.12
B10.PL
M21863 [25]#c
[6.6.11]
+
TRAV6-7/DV9*04
X13316 #c
2.3
C57BL/6
X13316 [20]#c
[6.6.9]
+
TRAV6-7/DV9*05
M35492 #c
 
 
M35492 [34](9)#c
[6.6.11]
+
TRAV6-7/DV9*06
X52448 #c
50.1
C57BL/10
X52448 [45]#c
[6.6.12]
+
TRAV6-7/DV9*07
U21453 #c
SB1-2a
BALB/c
U21453 [74]#c
[6.6.12]
+
TRAV6-7/DV9*08
U21409 #c
S324-228a
BALB/c
U21409 [75]p5'#c
[6.6.12]
+
S238-17a
BALB/c
U21401 [75]p5'#c
[6.6.12]
+
TRAV6-7/DV9*09
D12899 #c
F5-5
BALB/c x C57BL/6 (F1)
D12899 [62]#c
[x.6.15]
+
TRAV7-1
TRAV7-1*01
AF259071
728-4
BALB/c
U26790 [77]p5'#c
[x.x.12]
+
548-6a
BALB/c
U26766 [77]p5'#c
[x.x.11]
+
TRAV7D-2
TRAV7D-2*02
M38104 #g
J6.19
B10.A
M38104 [43]#g
[6.5.x]
-
TRAV7D-2*03
X83009 #c
61-21
BALB/c
X83009 [76]p5'#c
[x.x.x]
 
TRAV7D-3
TRAV7D-3*01
X02833
5/10-20D
C57BL/10
X05733 [12]#c
[6.5.11]
+
TRAV7D-3*02
M26423 #c
C11.A2
B10.A x AKR
M26423 [35]p5'#c
[6.5.10]
+
TRAV7D-4
TRAV7D-4*01
X56723
N0.8
C57BL/6
X56701 [47]#c
[6.5.12]
+
B5-10
C57BL/6
X56703 [47]#c
[6.5.12]
+
B11-5
C57BL/6
X56705 [47]#c
[6.5.12]
+
B12-1
C57BL/6
X56720 [47]#c
[6.5.12]
+
B13-2
C57BL/6
X56721 [47]#c
[6.5.12]
+
TRAV7D-4*02
AC003994
B10-4
C57BL/6
X56719 [47]#c
[6.5.12]
+
BVI/5.alpha1
CBA/J
M31647 [49]#c
[6.5.16]
+
TRAV7D-4*03
X02928 #c
TA31
C57BL/Ka
X02928 [2]#c
[6.5.x]
-
TA46
C57BL/Ka
X02927 [2]#c
[6.5.x]
-
TA84
C57BL/Ka
X02926 [2]#c
[6.5.13]
+
NA5
BALB/c
M27352 [10]#c
[6.5.12]
+
TRAV7D-4*04
X56722 #c
B615-1
C57BL/6
X56722 [47]#c
[6.5.12]
+
TRAV7-3
TRAV7-3*01
AC004407
 
 
X01133 [1]#c
[6.5.13]
+
TRAV7-3*02
L16803 #c
HD8
BALB/c
L16803 [68]p5'#c
[x.5.10]
+
TRAV7-3*03
AF037038 #c
Q1.1B6
SJL
AF037038 [94]#c
[6.5.10]
+
TRAV7-4
TRAV7-4*01
AC004407
E1
BALB/c
X63928 [3]#c
[6.5.11]
+
S532-8a
BALB/c
U21439 [74]p5'#c
[x.x.11]
+
TRAV7-5
TRAV7-5*01
AC004406
S322-507a
BALB/c
U21405 [75]p5'#c
[x.x.11]
+
TRAV7-5*03
X55825 #c
11.3
 
X55825 [44]p5'#c
[x.5.13]
+
14.12
 
X55826 [44]p5'#c
[x.5.13]
+
TRAV7-5*04
AF034160 #c
5
C57BL/6
AF034160 [92]p5'#c
[x.5.x]
-
TRAV7-6
TRAV7-6*02
X63927 #c
C5
C57BL/6
X63927 [3]#c
[6.5.13]
+
BST1-1.8
SJL
U06122 [50]p5'#c
[x.x.12]
+
TRAV8D-1
TRAV8D-1*01
AC003994
MR1.3
C57BL/6 x DBA/2 (F1)
AF126456 [100]#c
[5.6.10]
+
TRAV8D-1*02
X06773 #c
P14A.1
B10.BR
X06773 [11]#c
[5.6.x]
-
TRAV8D-2
TRAV8D-2*02
U46581 #c
Hb(46-76)/I-Ek
B10.BR
U46581 [56]#c
[5.6.11]
+
 
 
S64065 [65]#c
[5.6.11]
+
HD3
BALB/c
L16801 [68](10)p5'#c
[x.6.10]
+
TRAV8-1
TRAV8-1*01
AC004407
2B11
BALB/c
M34218 [41]#c
[5.6.11]
+
TRAV8-1*02
D16605 #c
pXTL72
C57BL/10
D16605 [64]p5'#c
[x.x.10]
+
TRAV9D-1
TRAV9D-1*01
AC003994
M14T-1
BALB/c
M33587 [42]p5'#c
[x.4.13]
+
pJF1A
BALB/c
M76612 [57]#c
[6.4.x]
-
TRAV9D-1*02
M16678 #c
AF.6.G7
C57BL/6
M16678 [13]#c
[6.4.11]
+
TRAV9D-2
TRAV9D-2*03
M33586 #c
p2111
BALB/c
M33586 [42]#c
[6.4.3]
 
TRAV9D-2*04
L16799 #c
HD47
BALB/c
L16799 [68](11)p5'#c
[x.4.x]
-
TRAV9D-3
TRAV9D-3*01
AC005402
627-4
BALB/c
U26770 [77]p5'#c
[x.x.12]
+
627-5
BALB/c
U26771 [77]p5'#c
[x.x.11]
+
TRAV9D-3*02
X05732 #c
8/10-2
C57BL/10
X05732 [12]#c
[6.4.12]
+
MR2.5
C57BL/6 x DBA/2 (F1)
AF126458 [100]#c
[6.4.11]
+
TRAV9D-4
TRAV9D-4*01
AC005855
AR-5
BALB/c x A/J (F1)
M21202 [27]#c
[6.4.9]
+
1B8
BALB/c
M98568 [58]#c
[6.4.x]
-
TRAV9D-4*02
X05734 #c
C9
C57BL/6
X05734 [12]#c
[6.4.12]
+
B5-46
C57BL/6
X56707 [47]#c
[6.4.12]
+
C9
C57BL/6
X56712 [47]#c
[6.4.12]
+
C9
C57BL/6
X56717 [47]#c
[6.4.13]
+
pXTL68
C57BL/10
D16601 [64]p5'#c
[x.x.11]
+
C7
C57BL/6
D45221 [73]p5'#c
[6.4.12]
+
C7
C57BL/6
D45225 [73]p5'#c
[6.4.12]
+
TRAV9D-4*03
X56716 #c
B2-13
C57BL/6
X56716 [47]p5'#c
[x.4.12]
+
TRAV9D-4*04
M87852 #c
bm4T17.2
C57BL/6
M87852 [52]#c
[6.4.11]
+
 
C57BL/6
AF038580 [95]#c
[6.4.x]
 
TRAV9-2
TRAV9-2*01
U26917
1.2
BALB/c
X83007 [76]p5'#c
[x.x.x]
 
TRAV9-3
TRAV9-3*01
U31878
7.2
BALB/c
X83010 [76]#c
[6.4.x]
 
TRAV9-3*02
M34194 #c
 
BALB/c
M34194 [41]#c
[6.4.11]
+
TRAV9-3*03
U05047 #c
2-3-B9
BALB/cJ
U05047 [85]#c
[6.4.13]
+
TRAV9-4
TRAV9-4*01
X02857
pHDS58
BALB.B
E01014 [7]#c
[6.4.10]
+
S324-228a
BALB/c
U21408 [75]p5'#c
[x.x.10]
+
TRAV10D
TRAV10D*01
AC003994
SPL1.1
SJL
U07654 [66]#c
[6.6.13]
+
2E.5
SJL
U07655 [66]#c
[6.6.12]
+
TRAV10D*02
U46077 #g
 
C57BL/6
U46077 [82]#g
[6.6.x]
 
TRAV10
TRAV10*01
AC005240
SJL-HE-1.1
SJL/J
X57397 [50]#c
[6.6.8]
+
T2.5-5
BALB/c
X53732 [50]#c
[6.6.10]
+
TRAV10*02
L34678 #c
RF33.21.22
C57BL/6
L34678 [79]#c
[6.6.12]
+
 
C57BL/6
U46076 [82]#g
[6.6.x]
 
TRAV10*03
U47051 #c
 
C57BL/6
U47051 [82]#c
[6.6.x]
 
TRAV10*04
U46078 #g
 
C57BL/6
U46078 [82]#g
[6.6.x]
 
TRAV10*05
U46079 #g
 
C57BL/6
U46079 [82]#g
[6.6.x]
 
TRAV11
TRAV11*01
AC005240
 
BALB/c
S75451 [80]#c
[6.6.13]
+
TRAV11*02
AY158218
34S-281
C57BL/6
M14506 [8]#g
[6.6.13]
+
 
NOD
AY158221 [108]#c
[6.6.X]
+
TRAV12D-1
TRAV12D-1*02
AC004101
MT1-33
BALB/c
M34206 [41]#c
[7.6.12]
+
M14T-1
BALB/c
M33589 [42]p5'#c
[x.6.x]
-
M14T-6
BALB/c
M33590 [42]p5'#c
[x.6.12]
+
M14T-7
BALB/c
M33591 [42]p5'#c
[x.6.12]
+
S322-507a
BALB/c
U21406 [75]#c
[7.6.12]
+
SB1-180
BALB/c
U21451 [74]#c
[7.6.13]
+
TRAV12D-1*03
X02936 #c
TA61
C57BL/Ka
X02936 [2](12)#c
[x.6.11]
+
TRAV12D-1*04
X60320 #c
HY-A2
C57BL/6
X60320 [51]#c
[7.6.x]
-
TRAV12D-1*05
U90515 #c
 
C57BL/6
U90515 [91]#c
[7.6.x]
 
TRAV12D-2
TRAV12D-2*01
X04332
5/10-20K
C57BL/10
X05012 [12]#c
[6.6.15]
+
TRAV12D-2*02
X06306
LB2
C57BL/6
X63929 [3](13)p5'#c
[6.6.13]
+
A13
BALB/c
M22659 [26](13)p5'#c
[x.6.x]
-
1B8
BALB/c
M98567 [58](13)p5'#c
[x.6.11]
+
S518-6a
BALB/c
U21417 [75](13)p5'#c
[6.6.11]
+
S520-2a
BALB/c
U21427 [75]#c
[6.6.11]
+
TRAV12D-2*03
X04330 #c
F3-26
C57BL/6
X04330 [4]#c
[6.6.10]
+
TRAV12D-2*04
M15063 #c
3F9
BALB/c
M15063 [16]#c
[6.6.11]
+
TRAV12D-2*05
M98569 #c
1C6
BALB/c
M98569 [58]p5'#c
[6.6.x]
-
TRAV12D-3
TRAV12D-3*02
AC005402
6.13
BALB/c
X83008 [76]#c
[7.6.x]
 
TRAV12D-3*03
M34210 #c
P1F12C4
BALB/c
M34210 [41]#c
[7.6.14]
+
TRAV12D-3*04
U90514 #c
 
C57BL/6
U90514 [91]#c
[7.6.x]
 
TRAV12-1
TRAV12-1*04
M16677 #c
ZZ38
C57BL/6
M16677 [13]#c
[7.6.11]
+
TRAV12-1*05
M38680 #c
 
C57BL/Ka
M38680 [23]#c
[7.6.x]
 
TRAV12-2
TRAV12-2*01
AC003997
MT1-7
BALB/c
M34208 [41]#c
[6.6.14]
+
4C1
BALB/c
M98574 [58]p5'#c
[6.6.13]
+
2-2-B9
BALB/c
U05045 [85]p5'#c
[6.6.13]
+
TRAV12-3
TRAV12-3*01
AC003997
P71
BALB/c
X02970 [3]#c
[7.6.10]
+
BVI/5.alpha2
CBA/J
M31649 [49]#c
[7.6.x]
-
P24
BALB/c
M98573 [58]p5'#c
[7.6.13]
+
MR3.2
C57BL/6 x DBA/2 (F1)
AF126460 [100]#c
[7.6.12]
+
 
C57BL/6
AF034161 [92](14)p5'#c
[x.x.15]
+
TRAV12-3*02
X17181 #g
MT114
Std:ddY
X17181 [22]#g
[7.6.x]
-
TRAV12-3*03
X67432 #c
Cw3/1.1A
DBA/2
X67432 [59]#g
[7.6.12]
+
TRAV12-3*04
U21399 #c
S106-1a
BALB/c
U21399 [75]p5'#c
[7.6.11]
+
S322-427a
BALB/c
U21403 [75]p5'#c
[7.6.11]
+
S532-28a
BALB/c
U21431 [75]p5'#c
[7.6.11]
+
S598-20a
BALB/c
U21438 [75]p5'#c
[7.6.11]
+
S533-10a
BALB/c
U21441 [74]p5'#c
[7.6.11]
+
TRAV13D-1
TRAV13D-1*01
AC005402
1E10
BALB/c
M34214 [41](15)p5'#c
[x.4.12]
+
S533-30a
BALB/c
U21434 [75]p5'#c
[5.4.10]
+
S629-17b
BALB/c
U21446 [74]p5'#c
[5.4.12]
+
TRAV13D-1*02
M20875 #c
6.9R.D6
B10.S/9R
M20875 [21]p5'#c
[5.4.11]
+
TRAV13D-1*03
M34216 #c
7/6AH1
BALB/c
M34216 [41]p5'#c
[x.4.12]
+
TRAV13D-2
TRAV13D-2*01
X17178
H-16.B11
SWR x NZB (F1)
U07874 [67]#c
[5.4.x]
-
TRAV13D-2*02
U21415 #c
S518-5a
BALB/c
U21415 [75]p5'#c
[5.4.13]
+
TRAV13D-4
TRAV13D-4*02
M20876 #c
7.9R.1F8
B10.S/9R
M20876 [21]#c
[5.4.11]
+
TRAV13-1
TRAV13-1*01
AC004406
P1D3A6
BALB/c
M34212 [41]#c
[5.4.12]
+
S520-8a
BALB/c
U21429 [75]#c
[5.4.12]
+
S533-1a
BALB/c
U21432 [75]p5'#c
[5.4.12]
+
S533-6a
BALB/c
U21437 [75]p5'#c
[5.4.12]
+
S629-17a
BALB/c
U21444 [74]p5'#c
[5.4.12]
+
SB3-5a2
BALB/c
U21478 [74]p5'#c
[5.4.12]
+
SB5-534a
BALB/c
U21480 [74]p5'#c
[5.4.12]
+
A1
CBA/Ca
AJ000157 [97]#c
[5.4.11]
+
A1
 
A97415 [99]#c
[5.4.11]
+
TRAV13-2
TRAV13-2*02
M38102 #g
J6.19
B10.A
M38102 [43]#g
[5.4.10]
+
FN1-18
C57BL/6
M13376 [9]p5'#c
[5.4.11]
+
FN1-18
C57BL/6
X02971 [3](16)p5'#c
[5.4.11]
+
FN1-18
C57BL/6
X04046 [9](16)p5'#c
[5.4.11]
+
TRAV13-4/DV7
TRAV13-4/DV7*01
AC003996
3B3
BALB/c
S80124 [78]#c
[5.4.13]
+
TRAV13-4/DV7*02
M26299 #c
BW5147
C57BL/6
M26299 [31]#c
[5.4.x]
 
TRAV13-4/DV7*03
U07879 #c
L-9.2
SWR x NZB (F1)
U07879 [67]#c
[5.4.10]
+
TRAV14D-1
TRAV14D-1*01
L77149
P14A-2
B10.BR
X06771 [11]#c
[6.6.10]
+
N2-7
B10.BR
M73762 [54]p5'#c
[x.6.11]
+
TRAV14D-1*02
U04623
TA19
C57BL/Ka
X02973 [2]p5'#c
[x.x.11]
+
TRAV14D-2
TRAV14D-2*01
U04312
L-9.W7
SWR x NZB (F1)
U07881 [67]#c
[6.6.11]
+
D10
AKR
U83242 [102]p5'#c
[6.6.10]
+
TRAV14D-2*02
M88352 #c
3HCa25
CBA/J
M88352 [60]p5'#c
[x.6.x]
 
TRAV14D-3/DV8
TRAV14D-3/DV8*01
L77152
N2-36
B10.BR
M73761 [54]p5'#c
[6.6.12]
+
 
B10.A
L21700 [69]#c
[6.6.x]
 
 
B10.A
X76971 [69]#c
[6.6.x]
 
TRAV14D-3/DV8*02
L77151
A2-21
B10.BR
M73765 [54]p5'#c
[x.6.12]
+
 
B10.A
L21699 [69]#c
[6.6.x]
 
 
B10.A
X76970 [69]#c
[6.6.x]
 
TRAV14D-3/DV8*03
U04624
L-9.10
SWR x NZB (F1)
U07878 [67]#c
[6.6.10]
+
TRAV14D-3/DV8*04
U07557 #c
 
C57BL/10
U07557 [32]p5'#c
[6.6.x]
 
TRAV14D-3/DV8*05
U07872 #c
H-10.B5
SWR x NZB (F1)
U07872 [67]#c
[6.6.x]
 
TRAV14D-3/DV8*06
U07875 #c
H-16.B6
SWR x NZB (F1)
U07875 [67]#c
[6.6.x]
 
TRAV14D-3/DV8*07
AF126457 #c
MR1.6
C57BL/6 x DBA/2 (F1)
AF126457 [100]#c
[6.6.12]
+
TRAV14-1
TRAV14-1*01
L77150
59.1KB5
B10.BR
M60999 [43]#g
[6.6.11]
+
N2-12
B10.BR
M73764 [54]p5'#c
[6.6.12]
+
TRAV14-1*03
AJ311368 #c
 
BALB/c
AJ311368 [32]p5'#c
[6.6.x]
 
TRAV14-2
TRAV14-2*01
L77148
TA39
C57BL/Ka
X02929 [2]#c
[6.6.9]
+
N30.7
C57BL/6
U95921 [81]#c
[6.6.12]
+
N2-9
B10.BR
M73550 [54]p5'#c
[6.6.x]
-
TRAV14-2*02
L77153
N2-8
B10.BR
M73551 [54]p5'#c
[6.6.11]
+
 
B10.A
L21701 [69]#c
[6.6.x]
 
 
B10.A
X76969 [69]#c
[6.6.x]
 
TRAV14-2*03
U04625
LD3
BALB/c
M34196 [41]#c
[6.6.12]
+
TRAV14-3
TRAV14-3*01
L77154
PL23.1
B10.PL
M21857 [25]#c
[6.6.11]
+
PL51.4.1
B10.PL
M21858 [25]#c
[6.6.11]
+
PL83.12
B10.PL
M21859 [25]#c
[6.6.11]
+
PL127.6
B10.PL
M21860 [25]#c
[6.6.11]
+
PL172.10
B10.PL
M21861 [25]#c
[6.6.11]
+
PL183.2
B10.PL
M21862 [25]#c
[6.6.11]
+
PL23.1
SJL/J
M35486 [34]#c
[6.6.11]
+
 
 
M35487 [34]#c
[6.6.11]
+
 
 
M35488 [34]#c
[6.6.11]
+
 
 
M35489 [34]#c
[6.6.11]
+
 
 
M35490 [34]#c
[6.6.11]
+
 
 
M35491 [34]#c
[6.6.11]
+
 
C57BL/6
Y11102 [96]#g
[6.6.10]
+
TRAV14-3*02
U04626
B4.5.3
 
U63546 [87]#c
[6.6.13]
+
9C217
BALB/c
U88296[93]#c
[6.6.11]
+
TRAV14-3*03
AF126459 #c
MR3.1
C57BL/6 x DBA/2 (F1)
AF126459 [100]#c
[6.6.9]
+
TRAV15D-1/DV6D-1
TRAV15D-1/DV6D-1*02
AC005402
TCDdelta1
BALB/c
M37600[28]#g
[7.4.x]
 
pT195/BW
C3H/HeN
M26448 [39]#c
[7.4.15]
+
TRAV15D-1/DV6D-1*03
X02935 #c
TA27
C57BL/Ka
X02935 [2]#c
[7.4.15]
+
TRAV15D-1/DV6D-1*04
X17225 #c
pCDS83
C57BL/6
X17225 [36]#c
[7.4.x]
 
TRAV15D-1/DV6D-1*05
U66666 #c
 
DBA/2
U66666 [88]#c
[7.4.x]
 
TRAV15D-1/DV6D-1*06
U66667 #c
 
DBA/2
U66667 [88]#c
[7.4.x]
 
TRAV15D-1/DV6D-1*07
U66668 #c
 
DBA/2
U66668 [88]#c
[7.4.x]
 
TRAV15D-2/DV6D-2 TRDV15D-2/DV6D-2*01 AC005402 Z53 BALB/c x 129 (F1) M37285 [29]#c [7.4.15] +
DB.2 DBA/2 AF085007 [107]#c [7.4.x]  
TRAV15D-2/DV6D-2*02 AJ271435 #c 2B4 B10.A AJ271435 [106]#c [7.4.x] -
TRAV15D-2/DV6D-2*03 AF085009 #c B.1 C57BL/6 AF085009 [107]#c [7.4.x]  
TRAV15D-2/DV6D-2*04 AF085006 #c DB.1 DBA/2 AF085006 [107]#c [7.4.x]  
TRAV15D-2/DV6D-2*05 AF085008 #c DB.3 DBA/2 AF085008 [107]#c [7.4.x]  
TRAV15-1/DV6-1
TRAV15-1/DV6-1*01
AC004406
 
BALB/c
M37597[28]#g
[7.4.13]
+
 
BALB/c
M37598[28]#g
[7.4.x]
 
 
BALB/c
M37599[28]#g
[7.4.x]
 
 
C57BL/Ka
M38679[28]#c
[7.4.x]
 
TRAV15-1/DV6-1*02
X63939 #c
M23
BALB/c
X63939 [17]#c
[7.4.x]
-
RAD11
AKR
M37694 [28]p5'#c
[x.x.21]
+
Y93A
C3H/HeN
M26447 [39]#c
[7.4.15]
+
TRAV15-2/DV6-2 TRAV15-2/DV6-2*01 AC003997 Z49 BALB/c x 129 (F1) M37287 [29]#g [7.4.x] -
Z80 BALB/c x 129 (F1) M37286 [29](18) #c [7.x.x] -
Y245 C3H/HeN S90647 [105]#c [7.4.x]  
Z49 C3H/HeN S90650 [105]#c [7.4.15] +
TRAV15-2/DV6-2*02 AF085010 #c B.2 C57BL/6 AF085010 [107]#c [7.4.x]  
TRAV16D/DV11
TRAV16D/DV11*01
AC005855
3D1
BALB/c
U05048[85]#c
[7.4.12]
+
TRAV16D/DV11*02
M16118 #c
42H11
C57BL/6
M16118[14]#c
[7.4.13]
+
1C6
BALB/c
M98570[58]p5'#c
[x.4.13]
+
BN4-3
C57BL/6 x CBA (F1)
AF296661 [104]#c
[7.4.15]
+
TRAV16D/DV11*03
M16119 #c
5.6.18
C57BL/6
M16119[14]#c
[7.4.12]
+
pCDS81
C57BL/6
X17226 [36]#c
[7.4.x]
-
TRAV16
TRAV16*01
AC004096
1A3
BALB/c
M98571 [58](17)p5'#c
[x.4.13]
+
2C8
BALB/c
M98572 [58](17)p5'#c
[x.4.13]
+
TRAV16*02
U07873 #c
H-15.E3
SWR x NZB (F1)
U07873[67]#c
[7.4.x]
 
TRAV16*03
S69341 #c
NY10
NOD/Lt
S69341 [70]#c
[7.4.x]
 
TRAV16*04
S73533 #c
A2G10
DBA/1
S73533 [71]#c
[7.4.11]
+
TRAV16*05
AF118105 #c
A9.2
DBA/1
AF118105 [101]#c
[7.4.11]
+
TRAV17
TRAV17*01
AC005938
7A5
SJL
U07662 [66]#c
[6.4.12]
+
H-12.C4
SWR x NZB (F1)
U07883 [67]#c
[6.4.x]
 
TRAV17*02
X60319 #g
HY-A1
C57BL/6
X60319 [51]#g
[6.4.14]
+
TRAV19
TRAV19*01
AC005938
L-9.7
SWR x NZB (F1)
U07880 [67]#c
[6.6.x]
 
M5T
BALB/c
X72904 [61]#c
[6.6.x]
-
726-18
BALB/c
U26777 [77]p5'#c
[x.x.14]
+
TRAV19*03
AF171639 #c
Ealpha6
C57BL/6
AF171639 [103]#c
[6.6.x]
 
TRAV20
TRAV20*02
M29272 #c
 
BALB/c
M29272 [37]#c
[6.6.10]
+
 
 
X51643 [38]#g
[6.6.10]
+
BW51H7
AKR
X16935 [40]#c
[6.6.10]
+
TRAV21/DV12
TRAV21/DV12*01
M94080
Z68
BALB/c x 129 (F1)
M37279 [29]#c
[7.4.14]
+
TRAV21/DV12*02
X02934 #c
TA1
C57BL/Ka
X02934 [2]#c
[7.4.12]
+
p5' : partial in 5' (more than 10 amino acids missing in 5'), p3' : partial in 3'
#c: rearranged cDNA, #g: rearranged genomic DNA

IMGT notes:
(1)+ indicates in-frame JUNCTION, - indicates out-of-frame JUNCTION, n.d. indicates not defined JUNCTION (for example for partial sequences), a blank indicates that the information is not relevant (germline gene).
(2)Pseudogene because DELETIONs of 4 nucleotides at positions 32, 54, 69 in FR1-IMGT and 89 in CDR1-IMGT.
(3) Between positions 293 and 294, there is an INSERTION of 12 nucleotides (cccagctggagg) which is a duplication of positions 280-293 (Bosc, N., IMGT comment, 28/08/2001.). This INSERTION may represent a sequencing error.
(4) The sequence U63774 is probably a TRAV4D-4*02 allele. However there is an DUPLICATION of 12 nucleotides (cccagctggagg) between positions 292 and 293. This INSERTION may represent a sequencing error.
(5) The allele designation was not attributed because it is not possible to determine if the nucleotide differences represent a new polymorphism or typing errors.
(6) V-REGION is partial: AA 97 to 107 are missing (partial FR3-IMGT and no CDR3-IMGT).
(7) Mutations in FR3-IMGT (a246>g; a247>g, g248>a, R83>E; a250>c, c251>a, T84>Q, according to the IMGT unique numbering) are probably sequencing or typing errors.
(8) Mutations in FR3-IMGT (a285>g; g288>a, according to the IMGT unique numbering) are probably sequencing or typing errors.
(9) Pseudogene because DELETION of one nucleotide at position 83 in CDR2-IMGT.
(10) Mutations in FR2-IMGT (g140>t, c141>a, G47>V; a142>g, K48>E; g145>a, G49>S according to the IMGT numbering) are probably sequencing or typing errors.
(11) Pseudogene because DELETION of one nucleotide at position 299 in codon 100 leading to a frameshift in FR3-IMGT.
(12) Pseudogene because DELETION of 3 nucleotides (a279-g281>del(3nt)#) leading to a frameshift in FR3-IMGT.
(13) X63929, M22659, M98567 and U21417 sequences being partial, it is not possible to decide if these genes belong to the allele *02, *04 or *05.
(14) AF034161 sequence being partial, it is not possible to decide if the gene belongs to the allele *01, *03 or *04.
(15) M34214 sequence being partial, it is not possible to decide if the gene belongs to the allele *01 or *03.
(16) X02971 and X04046 sequences being partial, it is not possible to decide if these genes belong to the allele *01 or *02.
(17) M98571 and M98572 sequences being partial, it is not possible to decide if these genes belong to the allele *01 or *05.
(18)M37286 has a deletion of 134 nucleotides compared to the IMGT reference sequence TRAV15-2/DV6-2 (M37287). It is not known if these differences result from a cloning artefact and/or typing or sequencing error.

References:
[1]Chien, Y.H. et al., Nature, 312, 31-35 (1984).
[2]Arden, B. et al., Nature, 316, 783-787 (1985).
[3]Becker, D.M. et al., Nature, 317, 430-434 (1985).
[4]Chou, H.S. et al., EMBO J., 5, 2149-2155 (1986).
[5]Dembic, Z. et al., Nature, 320, 232-238 (1986).
[6]Fink, P.J. et al., Nature, 321, 219-226 (1986).
[7]Haruo, S. et al., Unpublished (1986).
[8]Imai, K. et al., Proc. Natl. Acad. Sci. U.S.A., 83, 8708-8712 (1986).
[9]Gascoigne, N.R. et al., J. Exp. Med., 164, 113-130 (1986).
[10]Kishihara, K. et al., Eur. J. Immunol., 17, 477-482 (1987).
[11]Pircher, H. et al., Eur. J. Immunol., 17, 1843-1846 (1987).
[12]Iwamoto, A. et al., J. Exp. Med., 165, 591-600 (1987).
[13]Spinella, D.G. et al., J. Immunol., 138, 3991-3995 (1987).
[14]Sherman, D.H. et al., Mol. Cell. Biol., 7, 1865-1872 (1987).
[15]Hochgeschwender, U. et al., Nature, 326, 307-309 (1987).
[16]Rupp, F. et al., Proc. Natl. Acad. Sci. U.S.A., 84, 219-222 (1987).
[17] Chien, Y.H. et al., Nature, 330, 24-31 (1987).
[18]Acha-Orbea, H. et al., Cell, 54, 263-273 (1988).
[19]Malissen, M. et al., Cell, 55, 49-59 (1988).
[20]Korman, A.J. et al., J. Exp. Med., 168, 1021-1040 (1988).
[21]McElligott, D.L. et al., J. Immunol., 140, 4123-4131 (1988).
[22]Toda, M. et al., J. Mol. Biol., 202, 219-231 (1988).
[23]Yague, J. et al., Nucleic Acids Res., 16, 11355-11364 (1988).
[24]Bluestone, J.A. et al., J. Exp. Med., 168, 1899-1916 (1988).
[25]Urban, J.L. et al., Cell, 54, 577-592 (1988).
[26]Marolleau, J.P. et al., Cell, 55, 291-300 (1988).
[27] Tan, K.N. et al., Cell, 54, 247-261 (1988).
[28]Okazaki, K. et al., EMBO J., 7, 1669-1674 (1988).
[29]Elliott, J.F. et al., Nature, 331, 627-631 (1988).
[30]Furutani, M. et al., Int. Immunol., 1, 281-288 (1989).
[31]Takagaki, Y. et al., J. Immunol., 142, 2112-2121 (1989).
[32]Happ, M.P. et al., Nature, 342, 696-698 (1989).
[33]Palmer, M.S. et al., Nucleic Acids Res., 17, 2353-2353 (1989).
[34]Hood, L.E. et al., Cold Spring Harb. Symp. Quant. Biol., 54, 859-874 (1989).
[35]Johnson, N.A. et al., J. Immunol., 142, 3298-3304 (1989).
[36]Takeshita, S. et al., EMBO J., 8, 3261-3270 (1989).
[37] White, J. et al., J. Immunol., 143, 1822-1825 (1989).
[38]Letourneur, F. et al., Eur. J. Immunol., 19, 2269-2274 (1989).
[39]McConnell, T.J. et al., J. Immunol., 142, 2924-2931 (1989).
[40]Kumar, V. et al., J. Exp. Med., 170, 2183-2188 (1989).
[41]Taylor, A.H. et al., J. Exp. Med., 172, 1643-1651 (1990).
[42]Fondell, J.D. et al., J. Immunol., 144, 1094-1103 (1990).
[43]Hue, I. et al., J. Immunol., 144, 4410-4419 (1990).
[44]Danska, J.S. et al., J. Exp. Med., 172, 27-33 (1990).
[45]Aebischer, T. et al., Eur. J. Immunol., 20, 523-531 (1990).
[46]Yanagi, Y. et al., J. Virol., 64, 5919-5926 (1990).
[47] Hirama, T. et al., Eur. J. Immunol., 21, 483-488 (1991).
[48]Jameson, S.C. et al., J. Immunol., 147, 3185-3193 (1991).
[49]Heuer, J. et al., J. Immunol., 146, 775-782 (1991).
[50]Sutherland, R.M. et al., Immunogenetics, 34, 372-375 (1991).
[51]Uematsu, Y. et al., Eur. J. Immunol., 22, 603-606 (1992).
[52]Kobori, J.A. et al., Proc. Natl. Acad. Sci. U.S.A., 89, 2940-2944 (1992).
[53]Nakajima, P.B. et al., Immunogenetics, 35, 190-198 (1992).
[54]Thompson, S.D. et al., Immunogenetics, 36, 95-103 (1992).
[55]Natarajan, K. et al., Proc. Natl. Acad. Sci. U.S.A., 89, 8874-8878 (1992).
[56]Evavold, B.D. et al., J. Immunol., 148, 347-353 (1992).
[57] Fondell, J.D. et al., Cell. Biol., 12, 1480-1489 (1992).
[58]Solheim, J.C. et al., J. Immunol., 150, 800-811 (1993).
[59]Casanova, J.L. et al., J. Exp. Med., 176, 439-447 (1992).
[60]Smith, H.P. et al., J. Immunol., 149, 887-896 (1992).
[61]Marche, P.N. et al., J. Immunol., 151, 5319-5327 (1993).
[62]Iwashiro, M. et al., J. Virol., 67, 4533-4542 (1993).
[63]Austrup, F. et al., Immunobiology, 187, 36-50 (1993).
[64]Shimizu, T. et al., Leuk. Res., 17, 959-965 (1993).
[65]Mohapatra, S. et al., J. Immunol., 151, 688-698 (1993).
[66]Kuchroo, V.K et al., J. Exp. Med., 179, 1659-1664 (1994).
[67] Mao, C. et al., J. Immunol., 152, 1462-1470 (1994).
[68]Horwitz, M.S. et al., J. Virol., 68, 352-357 (1994).
[69]Tang, X.X. et al., Mol. Immunol., 31, 78-82 (1994).
[70]Nagata, M. et al., J. Immunol., 152, 2042-2050 (1994).
[71]Chiocchia, G. et al., Eur. J. Immunol., 24, 2775-2783 (1994).
[72]Rosloniec, E.F. et al., J. Immunol., 155, 4504-4511 (1995).
[73]Kondo, T. et al., J. Virol., 69, 6735-6741 (1995).
[74]Cerasoli, D.M. et al., J. Exp. Med., 182, 1327-1336 (1995).
[75]Cerasoli, D.M. et al., Unpublished (1995).
[76]Borrero, H. et al., J. Immunol., 154, 4247-4260 (1995).
[77] Shih, F.F. et al., Unpublished (1995).
[78]Ishii, Y. et al., J. Immunol. Methods, 186, 27-36 (1995).
[79]Pogulis, R.J. et al., Mol. Immunol., 32, 93-95 (1995).
[80]Barbo, J.V. et al., J. Immunol., 154, 1551-1559 (1995).
[81]Imarai, M. et al., Cell. Immunol., 160, 33-42 (1995).
[82]Dattamajumdar, A.K. et al., Immunogenetics, 44, 432-440 (1996).
[83]Ishii, Y. et al., J. Immunol., 156, 1735-1742 (1996).
[84]Zheng, B. et al., J. Exp. Med., 184, 1083-1091 (1996).
[85]Louie, K.A. et al., Mol. Immunol., 33, 747-758 (1996).
[86]Anjuere, F. et al., J. Biol. Chem., 72, 8505-8514 (1997).
[87] Plaksin, D. et al., J. Exp. Med., 184, 1251-1258 (1996).
[88]Pereira, P. et al., Unpublished (1996).
[89]Schmidt, D. et al., J. Exp. Med., 186, 1059-1075 (1997).
[90]Azuara, V. et al., Eur. J. Immunol., 27, 544-553 (1997).
[91]Johnston, S.L. et al., Immunogenetics, 46, 17-28 (1997).
[92]Nesic, D. et al., Unpublished (1997).
[93]Deng, E.F. et al., Unpublished (1997).
[94]Nicholson, L.B. et al., Proc. Natl. Acad. Sci. U.S.A., 95, 264-269 (1998).
[95]Sim, B.-C. et al., J. Immunol., 160, 1204-1211 (1998).
[96]Oxenius, A. et al., Eur. J. Immunol., 28, 390-400 (1998).
[97] Zelenika, D. et al., J. Immunol. 161, 1868-1874 (1998).
[98]Rognan, D. et al., J. Comput. Aided. Mol. Des., 14, 53-69 (2000).
[99]Waldmann, H. et al., Unpublished (1998).
[100]Meyers, C.M. et al., Immunogenetics, 50, 74-78 (1999).
[101]Doncarli, A. et al., Eur. J. Immunol., 29, 3636-3642 (1999).
[102]Grossman, T.H. et al., Unpublished (1999).
[103]Viret, C. et al., Immunogenetics, 51, 392-394 (2000).
[104]Wang, B. et al., J. Immunol., 166, 3829-3836 (2001).
[105] Ezquerra, A. et al., Eur. J. Immunol., 22, 491-498 (1992).
[106] Chien, Y.H. et al., Nature, 327, 677-682 (1987).
[107] Azuara, V. et al., Eur. J. Immunol., 28, 3456-3467 (1998).
[108] Sim, B.C. et al., Immunogenetics, 54, 874-883 (2003).


Created: 05/09/2001
Last updated: Friday, 22-Sep-2023 18:31:11 CEST
Author: Nathalie Bosc