Assignment of rearranged cDNAs and gDNAs to germline genes: Mouse (Mus musculus) TRGV

In this table are listed the rearranged complementary DNAs (cDNAs) and genomic DNAs (gDNAs) which are quoted in Arden, B. et al., Immunogenetics, 42, 501-530 (1995), or which represent potential new alleles without known germline sequences.

Rearranged cDNAs (#c) and gDNAs (#g) TRGV sequences have been assigned to IMGT TRGV genes and alleles as described in Germline gene tables, Alignments of alleles and Tables of alleles. Assignments were performed using IMGT/V-QUEST.

References are presented chronologically whenever possible.
Click here for correspondence between nomenclatures.

TRGV 
gene name		 Reference sequences
Rearranged cDNAs et gDNAs
 CDR lengths
Allele name
Accession number
Clone name
Strain
Accession numbers
TRGV1
TRGV1*03
M26763 #g
14.0
BALB/c
M26763 [3]#g
[8.6. ]
TRGV1*04
X03802 #c
5/10-13
 C57BL/10
X03802 [4]#c
 [8.6. ]
RAG12
AKR
M34973 [10]#c
[8.6. ]
RAG14
AKR
M34974 [10]#c
[8.6. ]
RAG43
AKR
M34975 [10]#c
[8.6. ]
TRGV1*05
U07554 #c
31-8GCL.4
AKR
U07554 [12]#c
[8.6. ]
TRGV1*06
M77017 #c
 
DBA/2
M77017 [11]#c
[8.6. ]
TRGV1*07
Z22847 #c
14.9
C57BL/10
Z22847 [13]#c
[8.6. ]
TRGV1*08
Z48588 #c
gB-V1
LI
Z48588 [14]#c
[8.6. ]
TRGV2
TRGV2*01
M12831
pHDS4/203
BALB/B
X00697 [1]#c
[8.6. ]
pHDS34
BALB/B
K02899 [2]p5'#c*
[x.6. ]
DFL12
DBA/2
K02900 [2]#c
[8.6. ]
8/10-2
C57BL/10
M12814 [4]#c/X03801 [4]#c
[8.6. ]
 
  
M30172 [5]#c
[8.6. ]
FT12
BALB/c
X04397 [5]#c
[8.6. ]
3F9-gamma4
BALB/c
X03983 [6]#c
[8.6. ]
RAG4
AKR
M34969 [10]#c
[8.6. ]
RAG11
AKR
M34970 [10]#c
[8.6. ]
RAG42
AKR
M34971 [10]#c
[8.6. ]
RAG50
AKR
M34972 [10]#c
[8.6. ]
 
DBA/2
M77018 [11]p5'#c
[8.6. ]
10.4
C57BL/10
Z22846 [13]#c
[8.6. ]
TRGV2*02
M54996 #c
 
  
M54996 [7]#c
[8.6. ]
TRGV2*03
X03985 #c
pHDS34
BALB/B
K02899 [2]p5'#c*
[x.6. ]
3F9gamma7
BALB/c
X03985 [6]#c
[8.6. ]
TRGV2*04
Z48589 #c
gB-V2
LI
Z48589 [14]#c
[8.6. ]
TRGV2*05
U07555 °
Vgamma2
AKR
U07555 [12]°
[8.6. ]
TRGV3
TRGV3*01
AF037352
 
BALB/c
U07558 [12]#c
[8.6. ]
TRGV3*02
M12833 #g
4.5
BALB/c
M26764 [3]#g
[x.x. ]
TRGV3*03
U07556 °
PB22
LI
Z49051 [14]#c
[8.6. ]
TRGV4
TRGV4*01
AF037352
 
  
M54989 [7]#c
[8.6. ]
 
  
M54990 [7]#c
[8.6. ]
TC-17
BALB/c
M13336 [8]#g
[8.6. ]
TRGV4*02
M30171 #c
FT13
BALB/c
M30171 [5]#c
[8.6. ]
FT2
BALB/c
X04315 [5]#c
[8.6. ]
TRGV4*03
M26765 #g
pD17gamma4
C57BL/10
M26765 [3]#g
[8.6. ]
TRGV4*04
Z12299 #c
G3
DBA/2
Z12299 [13]#c
[8.6. ]
TRGV4*05
Z48590 #c
gB-V3
LI
Z48590 [14]#c
[8.6. ]
TRGV5
TRGV5*01
AF037352
FT6
BALB/c
X04396 [5]#c
[x.x. ]
TC-13
BALB/c
M13337 [8]#g
[8.4. ]
gB-V4
LI
Z48591 [14]#c
[8.4. ]
TRGV6
TRGV6*03
M13338 #g
TC-11
BALB/C
M13338 [8]#g
[9.7. ]
TRGV6*04
Z48592 #g
gB-V5
LI
Z48592 [14]p5'#g
[9.7. ]
TRGV7
TRGV7*01
D29794
BW3.8.1
AKR
X05501 [9]#g
[5.8. ]
bB-V7
LI
Z48594 [14]#c
[5.8. ]
TRGV7*02
AF037352
gB-V6
LI
Z48593 [14]#c
[5.8. ]
 
C57BL/6
M71214 [15]#c
[5.8. ]
#: rearranged, #c: rearranged cDNA, #g: rearranged genomic DNA.
° DNA genomic sequence, but not known to be rearranged or germline.
 p3': partial in 3', p5': partial in 5' (more than 10 amino acids missing in 5').
 * partial sequence which could not be assigned to a given allele.
 
Reference:
[1] Saito, H et al., Nature, 309, 757-762 (1984).
[2] Krantz, D.M. et al., Nature, 313, 752-765 (1985).
[3] Traunecker, A. et al., EMBO J., 5, 1589-1593 (1986).
[4] Iwamoto, A. et al., J. Exp. Med. 163 ,1203-1212 (1986).
[5] Heilig, J.S. et al., Nature, 322, 836-840 (1986).
[6] Rupp, F. et al., Nature, 321, 876-878 (1986).
[7] Yoshikai, Y. et al., Nature, 324, 482-485 (1986).
[8] Garman, R.D. et al., Cell, 45, 733-742 (1986).
[9] Pelkonnen, J. et al., EMBO J., 6, 1941-1944 (1987).
[10] Kishihara, K., et al., Eur. J. Immunol., 18, 841-847 (1988).
[11] Thierry, R. et al., Immunogenetics, 36, 67-69 (1992). 
[12] Kalataradi, H. et al., J. Immunol., 153, 1455-1465 (1994)
[13] Roger, T.T. et al., Immunogenetics, 39, 68-70 (1994).
[14] Roger, T.T. et al., Immunogenetics, 43, 165-166 (1996).
[15] Lefrancois, L., unpublished.

Created: 17/02/2000
Author: Dominique Scaviner