IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

Ma's night monkey (Aotus nancymaae) TRBV subgroup names are according to the human TRBV subgroup names (Germline gene table: Human TRBV).

IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences								IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers				Strain	Clone names	Accession numbers	Positions in the sequence
TRBV2	TRBV2	TRBV2*01	(F)		+	+						AF107760	[1]	(1)	#c
TRBV4	TRBV4S1	TRBV4S1*01	(F)		+	+						AF107746	[1]	(1)	#c
TRBV4	TRBV4S2	TRBV4S2*01	(F)		+	+						AF107737	[1]	(1)	#c
TRBV5	TRBV5S1	TRBV5S1*01	(F)		+	+						AF107757	[1]	(1)	#c
TRBV5	TRBV5S2	TRBV5S2*01	(F)		+	+						AF107759	[1]	(1)	#c					AF107743	[1]	(1)	#c
TRBV6	TRBV6S1	TRBV6S1*01	(F)		+	+						AF107747	[1]	(1)	#c
TRBV6	TRBV6S2	TRBV6S2*01	(F)		+	+						AF107752	[1]	(1)	#c
TRBV7	TRBV7S1	TRBV7S1*01	(F)		+	+						AF107753	[1]	(1)	#c					AF107738	[1]	(1)	#c
	TRBV7S2	TRBV7S2*01	(F)		+	+						AF107741	[1]	(1)	#c
	TRBV7S3	TRBV7S3*01	(F)		+	+						AF107758	[1]	(1)	#c
	TRBV7S4	TRBV7S4*01	(F)		+	+						AF107748	[1]	(1)	#c
	TRBV7S5	TRBV7S5*01	(F)		+	+						AF107750	[1]	(1)	#c
	TRBV7S6	TRBV7S6*01	(F)		+	+						AF107749	[1]	(1)	#c
	TRBV7S7	TRBV7S7*01	(F)		+	+						AF107755	[1]	(1)	#c
	TRBV7S7	TRBV7S7*02	(F)		+	+						AF107740	[1]	(1)	#c
	TRBV7S8	TRBV7S8*01	(F)		+	+						AF107736	[1]	(1)	#c
TRBV9	TRBV9	TRBV9*01	(F)		+	+						AF107756	[1]	(1)	#c					AF107744	[1]	(1)	#c
TRBV9	TRBV9	TRBV9*02	(F)		+	+						AF107745	[1]	(1)	#c
TRBV12	TRBV12S1	TRBV12S1*01	(F)		+	+						AF107742	[1]	(1)	#c
TRBV15	TRBV15	TRBV15*01	(F)		+	+						AF107754	[1]	(1)	#c
TRBV24	TRBV24S1	TRBV24S1*01	(F)		+	+						AF107751	[1]	(2)	#c
TRBV28	TRBV28	TRBV28*01	(F)		+	+						AF107739	[1]	(1)	#c

#c: rearranged cDNA.

IMGT notes:

(1) V-REGION is partial: AA 1 to 8 are absent (partial FR1-IMGT).
(2) V-REGION is partial: AA 1 to 15 are absent (partial FR1-IMGT).

IMGT references:

[1] Vecino W. et al., Immunogenetics, 49, 792-799 (1999). PMID:10398806

See also (IMGT Scientific chart):

Created:: 26/03/2003
Last updated:: 22/09/2023
Authors:: Géraldine Folch

IMGT Repertoire (IG and TR)

Gene table: Ma's night monkey (Aotus nancymaae) TRBV