IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

Teleostei light chain type is Ig-Light-Iota (IGI).

IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers	Strain				Clone names	Accession numbers	Positions in the sequence
	IGIJ1S1	IGIJ1S1*01	F		+	+				CgL10 10.1		AF104898	[2]
	IGIJ1S2	IGIJ1S2*01	F		+	+				CgL10 10.2		AF104898	[2]
	IGIJ1S3	IGIJ1S3*01	F		+	+				CgL10 10.3		AF104898	[2]	(1)
	IGIJ1S4	IGIJ1S4*01	F		+	+				CgL5 5.1		AF104899	[2]	(2)
	IGIJ1S5	IGIJ1S5*01	F		+	+				CgL5 5.2		AF104899	[2]	(2)
	IGIJ1S6	IGIJ1S6*01	F		+	+				CgL5 5.3		AF104899	[2]	(1)
	IGIJ1S7	IGIJ1S7*01	(F)		+	+				US03		AJ225249	[1]		#c
	IGIJ2S1	IGIJ2S1*01	F		+	+				igl2		AJ293808	[3]		c (st)

c: cDNA sequence.
#c: rearranged cDNA.
(st): sterile transcript.

IMGT notes:

(1) The nucleotide sequences of CgL10 10.3 and CgL5 5.3 are identical but probably correspond to two different genes since the genomic maps are different.
(2) The nucleotide sequences of CgL5 5.1 and CgL5 5.2 are identical but probably correspond to two different genes since the genomic maps are different.

IMGT references:

[1] Widholm H. et al., Dev. Comp. Immunol., 23, 231-240 (1999). PMID:10402210
[2] Bengtén E. et al., Immunogenetics, 51, 647-658 (2000). PMID:10941836
[3] Wermenstam N.E. and Pilstrom L., Unpublished.

See also (IMGT Scientific chart):

Created:: 20/03/2002
Last updated:: 22/09/2023
Authors:: Nathalie Bosc

IMGT Repertoire (IG and TR)

Gene table: Atlantic cod (Gadus morhua) IGIJ