IMGT Repertoire (IG and TR)


Gene table: pig (Sus scrofa) TRAJ

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

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IMGT gene name IMGT allele name Fct R T Pr Positions in the locus IMGT/LIGM-DB reference sequences IMGT/LIGM-DB sequences from the literature
Breed Clone names Accession numbers Positions in the sequence (J-REGION) Secondary accession numbers Breed Clone names Accession numbers Positions in the sequence (J-REGION)
TRAJ1 TRAJ1*01 ORF (1) 96001-97600 TRAJ1 MAP AB053451 [1] 97439-97498
TRAJ2 TRAJ2*01 F 94001-96000 TRAJ2 MAP AB053451 [1] 94084-94149
TRAJ3 TRAJ3*01 F 93001-94000 TRAJ3 MAP AB053451 [1] 93581-93642
TRAJ4 TRAJ4*01 F 92001-93000 TRAJ4 MAP AB053451 [1] 92123-92187
TRAJ5 TRAJ5*01 F 90001-92000 TRAJ5 MAP AB053451 [1] 90485-90544
TRAJ6 TRAJ6*01 F 89001-90000 TRAJ6 MAP AB053451 [1] 89192-89253
TRAJ7 TRAJ7*01 F 88001-89000 TRAJ7 MAP AB053451 [1] 88239-88597
TRAJ8 TRAJ8*01 F 86501-88000 TRAJ8 MAP AB053451 [1] 86707-86766
TRAJ9 TRAJ9*01 F 85001-86500 TRAJ9 MAP AB053451 [1] 86105-86165
TRAJ10 TRAJ10*01 F 84001-85000 TRAJ10 MAP AB053451 [1] 84233-84297
TRAJ11 TRAJ11*01 F 83001-84000 TRAJ11 MAP AB053451 [1] 83208-83627
TRAJ12 TRAJ12*01 F 82001-83000 TRAJ12 MAP AB053451 [1] 82623-82682
TRAJ13 TRAJ13*01 F 81500-82000 TRAJ13 MAP AB053451 [1] 81571-81813
TRAJ14 TRAJ14*01 F 80501-81500 TRAJ14 MAP AB053451 [1] 81024-81075
TRAJ15 TRAJ15*01 F 80001-80500 TRAJ15 MAP AB053451 [1] 80325-80384
TRAJ16 TRAJ16*01 F 78001-80000 TRAJ16 MAP AB053451 [1] 79203-79263
TRAJ17 TRAJ17*01 F 77001-78000 TRAJ17 MAP AB053451 [1] 77809-77871
TRAJ18 TRAJ18*01 F 76501-77000 TRAJ18 MAP AB053451 [1] 76673-76738
TRAJ19 TRAJ19*01 P (2) 76001-76500 TRAJ19 MAP AB053451 [1] 76294-76349
TRAJ20 TRAJ20*01 F 75001-76000 TRAJ20 MAP AB053451 [1] 75513-75369
TRAJ21 TRAJ21*01 F 74001-75000 TRAJ21 MAP AB053451 [1] 74562-74616
TRAJ22 TRAJ22*01 F 73001-74000 TRAJ22 MAP AB053451 [1] 73079-73141
TRAJ23 TRAJ23*01 F 71501-73000 TRAJ23 MAP AB053451 [1] 71645-71707
TRAJ24 TRAJ24*01 F 71001-71500 TRAJ24 MAP AB053451 [1] 71204-71265
TRAJ25 TRAJ25*01 F 70201-71000 TRAJ25 MAP AB053451 [1] 70401-70460
TRAJ26 TRAJ26*01 F 69000-70200 TRAJ26 MAP AB053451 [1] 70096-70155
TRAJ27 TRAJ27*01 F 67501-69000 TRAJ27 MAP AB053451 [1] 67893-67951
TRAJ28 TRAJ28*01 F 67001-67500 TRAJ28 MAP AB053451 [1] 67243-67308
TRAJ29 TRAJ29*01 F 66001-67000 TRAJ29 MAP AB053451 [1] 66219-66278
TRAJ30 TRAJ30*01 F 64001-66000 TRAJ30 MAP AB053451 [1] 65074-65132
TRAJ31 TRAJ31*01 F 62001-64000 TRAJ31 MAP AB053451 [1] 62948-63003
TRAJ32 TRAJ32*01 F 60001-62000 TRAJ32 MAP AB053451 [1] 60536-60601
TRAJ33 TRAJ33*01 F 59001-60000 TRAJ33 MAP AB053451 [1] 59532-59588
TRAJ34 TRAJ34*01 F 58001-59000 TRAJ34 MAP AB053451 [1] 58856-58913
TRAJ35 TRAJ35*01 F 57001-58000 TRAJ35 MAP AB053451 [1] 57851-57909
TRAJ36 TRAJ36*01 F 56001-57000 TRAJ36 MAP AB053451 [1] 56298-56358
TRAJ37 TRAJ37*01 F 55001-56000 TRAJ37 MAP AB053451 [1] 55588-55649
TRAJ38 TRAJ38*01 F 54001-55000 TRAJ38 MAP AB053451 [1] 54086-54147
TRAJ39 TRAJ39*01 F 53001-54000 TRAJ39 MAP AB053451 [1] 53446-53508
TRAJ40 TRAJ40*01 F 50001-53000 TRAJ40 MAP AB053451 [1] 51609-51665
TRAJ41 TRAJ41*01 F 49501-50000 TRAJ41 MAP AB053451 [1] 49903-49964
TRAJ42 TRAJ42*01 F 49001-49500 TRAJ42 MAP AB053451 [1] 49399-49464
TRAJ43 TRAJ43*01 F 48001-49000 TRAJ43 MAP AB053451 [1] 48598-48651
TRAJ44 TRAJ44*01 F 47001-48000 TRAJ44 MAP AB053451 [1] 47524-47586
TRAJ45 TRAJ45*01 ORF (3) 46001-47000 TRAJ45 MAP AB053451 [1] 46391-46447
TRAJ46 TRAJ46*01 F 45501-46000 TRAJ46 MAP AB053451 [1] 45883-45945
TRAJ47 TRAJ47*01 F 44001-45500 TRAJ47 MAP AB053451 [1] 45022-45078
TRAJ47P (6) TRAJ47P*01 P (2) 43501-44000 TRAJ-P MAP AB053451 [1] 43679-43739
TRAJ48 TRAJ48*01 F 42801-43500 TRAJ48 MAP AB053451 [1] 43012-43074
TRAJ49 TRAJ49*01 F 42001-42800 TRAJ49 MAP AB053451 [1] 42218-42270
TRAJ50 TRAJ50*01 F 41001-42000 TRAJ50 MAP AB053451 [1] 41402-41457
TRAJ51 TRAJ51*01 P (2) 40001-41000 TRAJ51 MAP AB053451 [1] 40037-40098
TRAJ52 TRAJ52*01 F 38001-40000 TRAJ52 MAP AB053451 [1] 39052-39120
TRAJ53 TRAJ53*01 F 35501-38000 TRAJ53 MAP AB053451 [1] 35835-35900
TRAJ54 TRAJ54*01 F 35001-35500 TRAJ54 MAP AB053451 [1] 35196-35261
TRAJ55 TRAJ55*01 P (2) 33001-35000 TRAJ55 MAP AB053451 [1] 34307-34366
TRAJ56 TRAJ56*01 F 32001-33000 TRAJ56 MAP AB053451 [1] 32102-32163
TRAJ57 TRAJ57*01 F 31001-32000 TRAJ57 MAP AB053451 [1] 31456-31518
TRAJ58 TRAJ58*01 F 30001-31000 TRAJ58 MAP AB053451 [1] 30215-30277
TRAJ59 TRAJ59*01 ORF (4) 29001-30000 TRAJ59 MAP AB053451 [1] 29067-29126
TRAJ60 TRAJ60*01 F 28001-29000 TRAJ60 MAP AB053451 [1] 28817-28873
TRAJ61 TRAJ61*01 ORF (5) 21001-28000 TRAJ61 MAP AB053451 [1] 27821-27880

MAP: Mapped reference sequences.

IMGT notes:
  1. (1) Non canonical J-REGION: Pro-Leu-X-Gln instead of Phe-Gly-X-Gly and defective DONOR-SPLICE.
  2. (2) STOP-CODONs in J-REGION and defective DONOR-SPLICE.
  3. (3) Non canonical J-REGION: Leu-Gly-X-Gly instead of Phe-Gly-X-Gly.
  4. (4) Non canonical J-REGION: Phe-Gly-X-Arg instead of Phe-Gly-X-Gly.
  5. (5) Non canonical J-REGION: Phe-Gly-X-Lys instead of Phe-Gly-X-Gly.
  6. (6) One more TRAJ pseudogene (TRAJ47P) exists between TRAJ47 and TRAJ48 in comparison with human and mouse TRAJ loci [1].
IMGT references:
  1. [1] Uenishi H. et al., Immunology, 109, 515-526 (2003). PMID:12871218
Created:
09/09/2003
Last updated:
22/09/2023
Authors:
Nathalie Bosc