IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

The Spotted wobbegong (Orectolobus maculatus) IGHV genes and alleles have a temporary designation based on the IMGT gene name nomenclature rules for the unmapped genes, the incomplete loci, or the cDNAs in the absence of germline genes.
Spotted wobbegong (Orectolobus maculatus) genes are designated by a number for the subgroup [2] followed by the letter S and a number.
The Spotted wobbegong (Orectolobus maculatus) IGHV genes are found rearranged to IGHJ associated to IGHN different cassettes.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	IMGT/LIGM-DB reference sequences							IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct	R	T	Pr	Positions in the locus	Strain	Clone names	Accession numbers	Positions in the sequence	Secondary accession numbers			Strain	Clone names	Accession numbers	Positions in the sequence
IGHV2	IGHV2S1	IGHV2S1*01	(F)		+	+				7E-23		AF336087	[1]	#c
	IGHV2S2	IGHV2S2*01	(F)		+	+				7E-51		AF336088	[1]	#c
	IGHV2S3	IGHV2S3*01	(F)		+	+				7E-54		AF336089	[1]	#c
	IGHV2S4	IGHV2S4*01	(F)		+	+				7E-60		AF336090	[1]	#c
	IGHV2S5	IGHV2S5*01	(F)		+	+				7E-68		AF336091	[1]	#c
	IGHV2S6	IGHV2S6*01	(F)		+	+				7E-80		AF336092	[1]	#c
	IGHV2S7	IGHV2S7*01	(F)		+	+				7E-93		AF336093	[1]	#c
	IGHV2S8	IGHV2S8*01	(F)		+	+				7R-1		AF336094	[1]	#c

#c: rearranged cDNA.

IMGT references:

[1] Nuttall S.D. et al., Mol. Immunol. 38, 313-326 (2001). PMID:11566324
[2] Roman T. et al., Immunogenetics, 43, 325-326 (1996). PMID:9110939

See also (IMGT Scientific chart):

Created:: 31/01/2002
Last updated:: 22/09/2023
Authors:: Dominique Scaviner

IMGT Repertoire (IG and TR)

Gene table - Cassette gene content: spotted wobbegong (Orectolobus maculatus) IGHV