IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT subgroup	IMGT gene name	IMGT allele name	Fct		Chromosomal localization	R	T	Pr	IMGT/LIGM-DB locus reference sequences						IMGT/LIGM-DB sequences from the literature
IMGT subgroup	IMGT gene name	IMGT allele name	Fct		Chromosomal localization	R	T	Pr	Isolate	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)	Secondary accession numbers		Isolate	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)
IGLJ1	IGLJ1	IGLJ1*01	F			22				Kamilah	CM017869.1		IMGT000086	MAP	799502..799567			LT578337.1	IMGT000094	MAP	837628..837693
																	KB3781	CM054604.1	IMGT000152	MAP	787541..787606
																	KB3781	CM054580.1	IMGT000153	MAP	827650..827715
IGLJ2	IGLJ2	IGLJ2*01	F			22				Kamilah	CM017869.1		IMGT000086	MAP	805376..805441			LT578337.1	IMGT000094	MAP	843509..843574
																	KB3781	CM054604.1	IMGT000152	MAP	793419..793484
																	KB3781	CM054580.1	IMGT000153	MAP	833528..833593
IGLJ2A	IGLJ2A	IGLJ2A*01	F			22				KB3781	CM054580.1		IMGT000153	MAP	838913..838978
IGLJ3	IGLJ3	IGLJ3*01	F			22				Kamilah	CM017869.1		IMGT000086	MAP	810750..810815			LT578337.1	IMGT000094	MAP	848883..848948
																	KB3781	CM054604.1	IMGT000152	MAP	798807..798872
																	KB3781	CM054580.1	IMGT000153	MAP	844300..844365
IGLJ4	IGLJ4	IGLJ4*01	ORF	(1)		22				Kamilah	CM017869.1		IMGT000086	MAP	816327..816392			LT578337.1	IMGT000094	MAP	854467..854532
																	KB3781	CM054604.1	IMGT000152	MAP	802476..804552
																	KB3781	CM054580.1	IMGT000153	MAP	847961..850037
IGLJ5	IGLJ5	IGLJ5*01	ORF	(2)		22				Kamilah	CM017869.1		IMGT000086	MAP	820015..820080			LT578337.1	IMGT000094	MAP	858155..858220
IGLJ5	IGLJ5	IGLJ5*02	ORF	(2)		22				KB3781	CM054604.1		IMGT000152	MAP	808077..808142		KB3781	CM054580.1	IMGT000153	MAP	853562..853627
IGLJ6	IGLJ6	IGLJ6*01	F			22				Kamilah	CM017869.1		IMGT000086	MAP	823909..823974			LT578337.1	IMGT000094	MAP	862049..862114
																	KB3781	CM054604.1	IMGT000152	MAP	811970..812035
																	KB3781	CM054580.1	IMGT000153	MAP	857455..857520
IGLJ7	IGLJ7	IGLJ7*01	F			22				Kamilah	CM017869.1		IMGT000086	MAP	827116..827181			LT578337.1	IMGT000094	MAP	865256..865321
																	KB3781	CM054604.1	IMGT000152	MAP	815178..815243
																	KB3781	CM054580.1	IMGT000153	MAP	860662..860727

MAP: mapped sequences.

IMGT notes:

(1) noncanonical J-HEPTAMER: caccaca instead of cacagtg, noncanonical DONOR-SPLICE: nat instead of ngt
(2) noncanonical J-HEPTAMER: cacagca instead of cacagtg

More information:

See also (IMGT Scientific chart):

Created:: 27/09/2022
Last updated:: 22/09/2023
Authors:: Chahrazed Debbagh

IMGT Repertoire (IG and TR)

Gene table: Western lowland gorilla (Gorilla gorilla gorilla) IGLJ