IMGT Repertoire (IG and TR)

Fct: FUNCTIONALITY
- F: Functional
- P: Pseudogene
- ORF: Open Reading Frame
R: Rearranged
T: Transcribed
Pr: Translated into protein

"+" or "-" indicates if the gene sequences have been found (+) or not been found (-) rearranged (R), transcribed (T) and/or translated into protein (Pr). Arbitrarily that information is shown on the first line of each gene when the data have been confirmed by several studies.

Functionality is shown between parentheses, (F) and (P), when the accession number refers to rearranged genomic DNA or cDNA and the corresponding germline gene has not yet been isolated.
Functionality is shown between brackets, [F] and [P], when the accession number refers to genomic DNA, but not known as being germline or rearranged.

Click on:

IMGT gene name to get the corresponding IMGT/GENE-DB entry,
IMGT allele name to see the corresponding Alignments of alleles,
accession number to get the corresponding IMGT/LIGM-DB entry.

IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	IMGT/LIGM-DB locus reference sequences					IMGT/LIGM-DB sequences from the literature
IMGT gene name	IMGT allele name	Fct	Chromosomal localization		R	T	Pr	Breed	Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)	Secondary accession numbers	Breed		Clone names	Accession numbers	Positions in the sequence (J-GENE-UNIT)
	TRDJ1	TRDJ1*01	F			7	+	+		Rambouillet	CM008478.1		IMGT000048	MAP	2746919..2746999		Texel	TRDJ1-1*01	OviAri_1_chr7	[1]	MAP	complement(218962..219042)
	TRDJ1	TRDJ1*01	F			7	+	+		Rambouillet	CM008478.1		IMGT000048	MAP	2746919..2746999		Altamurana		AJ277510	[2]		44..124
	TRDJ2	TRDJ2*01	ORF	(1)		7				Rambouillet	CM008478.1		IMGT000048	MAP	2754145..2754227		Texel	TRDJ1-3*01	OviAri_1_chr7	[1]	MAP	complement(211699..211781)
	TRDJ3	TRDJ3*01	F			7	+	+		Rambouillet	CM008478.1		IMGT000048	MAP	2756521..2756607		Texel	TRDJ1-4*01	OviAri_1_chr7	[1]	MAP	complement(209319..209405)
	TRDJ3	TRDJ3*01	F			7	+	+		Rambouillet	CM008478.1		IMGT000048	MAP	2756521..2756607		Altamurana		AJ277511	[2]		56..142
	TRDJ4	TRDJ4*01	F			7	+	+		Rambouillet	CM008478.1		IMGT000048	MAP	2752696..2752772		Texel	TRDJ1-2*01	OviAri_1_chr7	[1]	MAP	complement(213154..213230)
	TRDJ4	TRDJ4*01	F			7	+	+		Rambouillet	CM008478.1		IMGT000048	MAP	2752696..2752772		Altamurana		AJ277512	[2]		71..147

MAP: Mapped reference sequences.

IMGT notes:

(1) noncanonical J-HEPTAMER, noncanonical J-MOTIF

IMGT references:

[1] Piccinni B. et al., BMC Genomics, 16:709 (2015). PMID:26383271
[2] Massari S.et al., Immunogenetics 52(1-2):1-8 (2000). PMID:11132143

More information:

See also (IMGT Scientific chart):

Created:: 15/06/2016
Last updated:: 22/09/2023
Authors:: Imène Chentli, Perrine Pégorier

IMGT Repertoire (IG and TR)

Gene table: sheep (Ovis aries) TRDJ