Here you are: IMGT Web resources > IMGT Repertoire (RPI) > RPI entries from gene to protein

IMGT reference sequences in FASTA format:

Nucleotide sequences with gaps

The FASTA header contains:
IMGT accession number | gene and allele name | species | functionality | exon name | domain name | domain type | alternative splicing (if it is) | partial (if it is) 
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX1|Splicing 12|
atgaatatgcccaacgaacgcctcaaatggctaatgctgttcgcagctgttgccctcatt
g
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX2|[D1]|C-LIKE|Splicing 12|
cttgtggtagtcagaccctagctgccaatcccccagatgccgaccaaaaaggacccgtct
tcctcaaggaacccaccaaccgcattgacttctccaactccacgggcgcagagatcgagt
gcaaggccagcggcaatccc............atgcccgagattatttggatcaggagcg
acggt..................accgccgtgggtgatgtgcccggattgcgtcagatct
ca............tccgacggcaagctggtcttccctccattccgcgccgaggactacc
gccaggag...gtccatgcccaggtgtacgcctgcctggcccgcaaccag.........t
tcggatccattatctcccgggacgtccatgtgcgagccg
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX3|[D2]|C-LIKE|Splicing 12|
...............tcgtttcacagttctacataaccgaggccgagaat...gagtacg
taattaaa.........gggaacgcggcggtggtcaagtgtaagatcccatccttcgtgg
ccgat...ttcgtgcaggttgaggcctgggtggacgaggagggcatg.............
..gagttgtggcgcaacaatgccaccgacgcctatg
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX4|[D2]|C-LIKE|Splicing 12|
atgga............aagtacctggtattgccctctggagagctgcacatccgtgagg
ttggacccgag...gacggatacaagagctaccagtgccgaaccaaacatcgtctgaccg
gagaaacccgattaagtgccacaaaaggacgattggtcatcacag
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX5|[D3]|C-LIKE|Splicing 12|
.......agcccgttagcagtagtccgcccaaaatcaatgctctgacctataagcccaat
attgtggagtcc......atggcgtccaccgcaatactttgtcccgcccaaggctatcca
............gctcctagttttag
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX6|[D3,D4,D5,D6]|C-LIKE|Splicing 12|
atggtacaagttcatcgaaggaaca............acccgtaaacaagctgtggtgct
aaatgaccgt........................gtgaagcaggtctctggtactctcat
tattaaggacgcagtagtc......gaggactccggaaaatacctgtgcgtggtgaacaa
t..................tccgtgggaggcgaaagcgttgagactgtgcttaccgtc..
................actgcccccctatccgctaagatcgatcctcccacacagacagt
tgacttc.........ggacgccccgccgtattcacttgccagtacactggaaatccc..
..........atcaagaccgttagctggatgaaggacggc....................
.aaggctatcggacacagcgaa......................................
.............cccgtgctgcgcatcgaatccgtgaagaag......gaggacaaggg
catgtaccagtgcttcgtaagaaacgac............caggaatcggcggaggcgag
tgctgagctgaagctc.........ggaggccgtttcgatccccccgtcatccgacaggc
cttccaggaagagaccatggaaccc.........ggaccaagtgtattcctcaagtgcgt
cgccggcggaaacccc............acgcccgaaatttcctgggaactcgacggcaa
g..................aaaatcgccaacaacgatcgctatcaggtcggacagtatgt
g.........acggtcaacggagatgtggtttcctatctgaacataacctcggtccacgc
c......aacgatggcggtctctacaagtgcatagccaag....................
....agcaaagtgggcgtggccgaacactcggcc......aagttgaatgtatatggact
gccctacatccggcaaatggagaag...aaggcaattgttgct.........ggagaaac
cctgattgtcacatgtcctgtagctggatacccc............atcgattcgattgt
ctgggagcgag
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX7|[D6]|C-LIKE|Splicing 12|
ataaccgt..................gccctgcccatcaaccgcaaacagaaggtc....
.............................ttccccaacggaacgctgattatcgagaatg
tggaacggaac...tcagaccaagcgacctacacttgcgttgccaagaatcag.......
..gaaggatactctgctcgaggatctctggaagtgcaagtcatgg
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX8|[D7]|C-LIKE|Splicing 12|
......................tgccgccccaggttttgccctttagtttcggtgaatcc
gccgccgatgtc......ggcgatattgccagtgccaactgtgtggtgcccaagggagat
ctg.........cccctggagattcgctggtccctcaactctgct...............
...ccaatcgtaaacggcgaaaatgggtttaccctggtg..................cgt
ctgaataagcgcacgagtctgttaaacattgattctctaaatgct......tttcatcgc
ggtgtctacaagtgcatagccacaaatccg............gctgggaccagtgaatat
gtagctgaattacaagttaatg
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX9|[D8]|C-LIKE|Splicing 12|
......................tacctcccagatggatcctcgagcccaccgataaggcc
ttcgcccag.........ggatccgatgccaaggttgaatgcaaggctgatggcttcccc
............aaaccccaagttacatggaagaaagcagttg
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX10|[D8,D9]|C-LIKE|[D10,D11,D12]|F-LIKE|Splicing 12|
.gcgac...............acccccggagagtacaaggatctaaagaagagcgac...
...............aacatccgcgtggaagagggcactctgcatgtcgacaacatccaa
aag......accaacgagggctactatctgtgcgaggctatcaatgga............
ataggctccggcctctcggctgtgattatgatcagc...............gttcaggcc
cctccagagttcacggagaagctgcgcaaccagaccgcccgacga.........ggagaa
cccgccgtactccagtgcgaggcgaagggcgagaag............cccattggcatc
ttgtggaacatgaacaacatgcgactggac.........ccaaagaacgacaatcggtac
accattcgtgaggagatc...............ctttccaccggagttatgtccagtctg
tcgatcaagcgcaccgagaga......tccgactccgccctattcacctgtgtcgccact
aatgcc............tttggatccgatgacgccagcataaatatgattgtccaggaa
gttccggagatgccatatgctttgaaggtactcgacaaatccggacgttccgtgcagctg
agctgggcgcaaccctacgatggcaactcccctctggacaggtacatcattgagtttaag
cgttctcgtgcctcctggagcgaaattgatcgcgtcatcgtgcccggacacaccacagaa
gcccaagtgcagaagctcagccccgccaccacctacaacattcgcatcgtggccgaaaac
gccatcggcacatcccaatcctctgaagcggtcactatcatcacagccgaagaagcaccc
tccggcaagccccagaacatcaaggtagaacccgtgaaccagaccaccatgcgcgtcacc
tggaagccaccaccacgcaccgagtggaacggagagatcctgggctactacgtcggctac
aagctatccaacactaactcgtcctacgttttcgagaccatcaacttcatcaccgaggag
ggcaaggagcacaacctggaactgcagaacctgcgcgtgtacacccagtactccgtggtg
atccaggccttcaacaagatcggagctggtccactgagcgaagaggagaaacaattcacg
gccgagggaacgcccagccagccacccagtgacaccgcctgcaccaccttaacttcgcag
accattcgcgtcggatgggtgagcccacccctggaatccgccaacggagtgatcaagacc
tataaggttgtctatgcccccagtgacgagtggtatg
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX11|[D12]|F-LIKE|Splicing 12|
acgagaccaagcgacactataagaagacggcctcctccgacacagtcctccatggcttaa
agaagtacaccaactacacaatgcaggtcctggccacaacagccggaggcgatggcgtcc
gcagcgttcccatccactgccaaaccgaacccgatg
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX12|[D13],[D15]|F-LIKE|[D14]|C-LIKE|Splicing 12|
ttcccgaagcacccactgatgtaaaggctcttgttatgggtaacgccgctatcctggtat
cctggcgcccaccagcacagccaaacggcattatcacccagtacaccgtgtactccaagg
ccgaaggcgctgagactgagacaaagacccagaaggttccccactaccagatgagtttcg
aggccaccgaactggagaagaacaagccctacgagttctgggtgacagctagcaccacca
ttggcgaaggccagcagtctaagagcatagtggccatgcccagcgaccaggtgcccgcca
agatcgcctccttcgacgacaccttcactgccaccttc.........aaggaggacgcca
agatgccctgcctggccgttggagccccc............caacccgagatcacatgga
agatcaagggc.....................gtcgaattcagtgccaacgatcgcatgc
gc..............................gtcctccccgacggatcgctgctgatca
agtcggtaaatcgc......caggatgccggagactactcctgccacgccgagaactcga
ttgctaaggactccatcacgcacaaactgattgttctggcaccaccacaatcgccccacg
tcaccctctcggcaaccaccactgatgccctgactgtaaagttgaagccccatgagggag
acactgctcctctgcatggatacaccctgcactacaagccag
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX13|[D15]|F-LIKE|Splicing 12|
aattcggagaatgggaaacatcggaagtgtctgtcgactcacagaagcacaacatcgaag
gtctcttgtgcggctcccgctatcaggtctatgccacaggattcaataa
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX14|[D16]|F-LIKE|Splicing 12|
cattggagctggcgaagcttctgacattttgaacacccggaccaagggacagaagcccaa
gctgcccgagaaacctcgcttcattgaagtgtcgtccaactcggtgtccctgcacttcaa
ggcctggaaagatggaggatgccccatgtcgcactttgtggtggagagcaagaagcg
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX15|[D16]|F-LIKE|Splicing 12|
cgatcaaattgagtggaaccaaatttcgaacaacgtgaagcccgataacaactacgtggt
tttggacctggaacccgccacctggtacaacctccgcatcactgcccacaactcggctgg
cttcactgtggccgaatacgactttgccaccttaaccgttaccggag
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX16|[CO+TM+CY]|Splicing 12|
gcactatcgcaccctcgcgagatttacccgagttaagcgccgaggacacgatccgcatta
tcctctcgaacctaaacttagttgtgcccgtcgtggcggctctgctcgtcataatcatag
cgataattgttatttgtatactgcgtagcaagggcaatcaccacaaag
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX17|[CY]|Splicing 12|
acgatgtagtttacaatcagacaatgggacccggcgccaccctggacaagcgtcgtccgg
acctgcgggatgagctcggatacatcgccccgcccaaccggaagctgccccccgttcccg
gatccaactataatacctgtgaccggattaagcgag
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX18|[CY]|Splicing 12|
gccgcggtggcctccggtccaaccactcgacctgggaccctcgacgcaatcccaacctgt
acgaggagctgaaggccccgccagtgccgatgcacggcaaccattacggccacgcccacg
gcaatgccgagtgccactacaggcatccag
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX19|[CY]|Splicing 12|
gcatggaagatgaaatctgcccctatgccacgttccacctgctcggattccgcgaggaaa
tggaccctaccaaggccatgaacttccagaccttcccccaccagaacggacacgccggcc
cagttcccggacacgcgggcactatgcttccaccaggacatccaggacacgtgcactccc
gctccggatcgcaatcgatgcctcgggccaatcgataccagcgaaagaacagccagggcg
gacagtcctcaatctacacgccagctcccgaatacgatgatcccgccaactgtgccgaag
aggaccaatat
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX20|[CY]|Splicing 12|
cgtcgatacacccgcgtcaactcgcaaggcggtagcctgtactccggacccggacccgaa
tacgacgatcccgccaactgcgcacccgaagaggatcagtacggctcccagtacggagga
ccctatggacagccctatgatcactacggttcccggggatccatgggacgtcgtagcatc
g
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX21|[CY]|Splicing 12|
gctctgctcgcaatcctggcaatggatcacccgagcctccaccaccaccaccacgcaacc
acgacatgagcaactcctcattcaacgactccaaggagagtaatgagatctcagaggcag
agtgcgatcgtgaccacggaccacgcggaaactacggag
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX22|[CY]|Splicing 12|
cagtgaagcgatctccacaaccgaaagatcagcgcaccaccgaagaaatgcgcaaactga
tagaaag
>AE003841|DSCAM*01|Drosophila melanogaster|F|EX23|[CY]|Splicing 12|
aaacgaaaccggcccaaaacaactccaactccaacaagcaaatggcgcaggattcacagc
ctacgatactatggcagtg