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IMGT reference sequences in FASTA format:

Nucleotide sequences with gaps

The FASTA header contains:
IMGT accession number | gene and allele name | species | functionality | exon name | domain name | domain type | alternative splicing (if it is) | partial (if it is) 
>AF363458|PDCD1*01|Homo sapiens|F|EX1|
atgcagatcccacaggcgccctggccagtcgtctgggcggtgctacaactgggctggcgg
ccaggatggttcttag
>AF363458|PDCD1*01|Homo sapiens|F|EX2|[D]|V-LIKE|
actccccagacaggccctggaacccccccaccttctccccagccctgctcgtggtgaccg
aaggggacaacgccaccttcacctgcagcttctccaacacatcggag.............
..agcttcgtgctaaactggtaccgcatgagccccagcaaccagacggacaagctggccg
ccttccccgag............gaccgcagccagcccggccaggactgc..........
.....cgcttccgtgtcacacaactgcccaacgggcgtgacttccacatgagcgtggtca
gggcccggcgcaatgacagcggcacctacctctgtggggccatctccctggcc...ccca
aggcgcagatcaaagagagcctgcgggcagagctcagggtgacag
>AF363458|PDCD1*01|Homo sapiens|F|EX3|
agagaagggcagaagtgcccacagcccaccccagcccctcacccaggccagccggccagt
tccaaaccctggtggttggtgtcgtgggcggcctgctgggcagcctggtgctgctagtct
gggtcctggccgtcatctgctcccgggccgcacgag
>AF363458|PDCD1*01|Homo sapiens|F|EX4|
ggacaataggagccaggcgcaccggccagcccctg
>AF363458|PDCD1*01|Homo sapiens|F|EX5|
aaggaggacccctcagccgtgcctgtgttctctgtggactatggggagctggatttccag
tggcgagagaagaccccggagccccccgtgccctgtgtccctgagcagacggagtatgcc
accattgtctttcctagcggaatgggcacctcatcccccgcccgcaggggctcagccgac
ggccctcggagtgcccagccactgaggcctgaggatggacactgctcttggcccctc
>AY238517|PDCD1*02|Homo sapiens|F|EX1|
atgcagatcccacaggcgccctggccagtcgtctgggcggtgctacaactgggctggcgg
ccaggatggttcttag
>AY238517|PDCD1*02|Homo sapiens|F|EX2|[D]|V-LIKE|
actccccagacaggccctggaacccccccaccttctccccagccctgctcgtggtgaccg
aaggggacaacgccaccttcacctgcagcttctccaacacatcggag.............
..agcttcgtgctaaactggtaccgcatgagccccagcaaccagacggacaagctggccg
ccttccccgag............gaccgcagccagcccggccaggactgc..........
.....cgcttccgtgtcacacaactgcccaacgggcgtgacttccacatgagcgtggtca
gggcccggcgcaatgacagcggcacctacctctgtggggccatctccctggcc...ccca
aggcgcagatcaaagagagcctgcgggcagagctcagggtgacag
>AY238517|PDCD1*02|Homo sapiens|F|EX3|
agagaagggcagaagtgcccacagcccaccccagcccctcacccaggccagccggccagt
tccaaaccctggtggttggtgtcgtgggcggcctgctgggcagcctggtgctgctagtct
gggtcctggccgtcatctgctcccgggccgcacgag
>AY238517|PDCD1*02|Homo sapiens|F|EX4|
ggacaataggagccaggcgcaccggccagcccctg
>AY238517|PDCD1*02|Homo sapiens|F|EX5|
aaggaggacccctcagccgtgcctgtgttctctgtggactatggggagctggatttccag
tggcgagagaagaccccggagccccccgtgccctgtgtccctgagcagacggagtatgcc
accattgtctttcctagcggaatgggcacctcatcccccgcccgcaggggctcagctgac
ggccctcggagtgcccagccactgaggcctgaggatggacactgctcttggcccctc
>BC074740|PDCD1*03|Homo sapiens|F|EX1|
atgcagatcccacaggcgccctggccagtcgtctgggcggtgctacaactgggctggcgg
ccaggatggttcttag
>BC074740|PDCD1*03|Homo sapiens|F|EX2|[D]|V-LIKE|
actccccagacaggccctggaacccccccaccttctccccagccctgctcgtggtgaccg
aaggggacaacgccaccttcacctgcagcttctccaacacatcggag.............
..agcttcgtgctaaactggtaccgcatgagccccagcaaccagacggacaagctggccg
ctttccccgag............gaccgcagccagcccggccaggactgc..........
.....cgcttccgtgtcacacaactgcccaacgggcgtgacttccacatgagcgtggtca
gggcccggcgcaatgacagcggcacctacctctgtggggccatctccctggcc...ccca
aggcgcagatcaaagagagcctgcgggcagagctcagggtgacag
>BC074740|PDCD1*03|Homo sapiens|F|EX3|
agagaagggcagaagtgcccacagcccaccccagcccctcacccaggccagccggccagt
tccaaaccctggtggttggtgtcgtgggcggcctgctgggcagcctggtgctgctagtct
gggtcctggccgtcatctgctcccgggccgcacgag
>BC074740|PDCD1*03|Homo sapiens|F|EX4|
ggacaataggagccaggcgcaccggccagcccctg
>BC074740|PDCD1*03|Homo sapiens|F|EX5|
aaggaggacccctcagccgtgcctgtgttctctgtggactatggggagctggatttccag
tggcgagagaagaccccggagccccccgtgccctgtgtccctgagcagacggagtatgcc
accattgtctttcctagcggaatgggcacctcatcccccgcccgcaggggctcagccgac
ggccctcggagtgcccagccactgaggcctgaggatggacactgctcttggcccctc
>L27440|PDCD1*04|Homo sapiens|F|EX1|
atgcagatcccacaggcgccctggccagtcgtctgggcggtgctacaactgggctggcgg
ccaggatggttcttag
>L27440|PDCD1*04|Homo sapiens|F|EX2|[D]|V-LIKE|
actccccagacaggccctggaacccccccaccttctccccagccctgctcgtggtgaccg
aaggggacaacgccaccttcacctgcagcttctccaacacatcggag.............
..agcttcgtgctaaactggtaccgcatgagccccagcaaccagacggacaagctggccg
ccttccccgag............gaccgcagccagcccggccaggactgc..........
.....cgcttccgtgtcacacaactgcccaacgggcgtgacttccacatgagcgtggtca
gggcccggcgcaatgacagcggcacctacctctgtggggccatctccctggcc...ccca
aggcgcagatcaaagagagcctgcgggcagagctcagggtgacag
>L27440|PDCD1*04|Homo sapiens|F|EX3|
agagaagggcagaagtgcccacagcccaccccagcccctcacccaggtcagccggccagt
tccaaaccctggtggttggtgtcgtgggcggcctgctgggcagcctggtgctgctagtct
gggtcctggccgtcatctgctcccgggccgcacgag
>L27440|PDCD1*04|Homo sapiens|F|EX4|
ggacaataggagccaggcgcaccggccagcccctg
>L27440|PDCD1*04|Homo sapiens|F|EX5|
aaggaggacccctcagccgtgcctgtgttctctgtggactatggggagctggatttccag
tggcgagagaagaccccggagccccccgtgccctgtgtccctgagcagacggagtatgcc
accattgtctttcctagcggaatgggcacctcatcccccgcccgcaggggctcagctgac
ggccctcggagtgcccagccactgaggcctgaggatggacactgctcttggcccctc
>U64863|PDCD1*05|Homo sapiens|F|EX1|
atgcagatcccacaggcgccctggccagtcgtctgggcggtgctacaactgggctggcgg
ccaggatggttcttag
>U64863|PDCD1*05|Homo sapiens|F|EX2|[D]|V-LIKE|
actccccagacaggccctggaacccccccaccttcttcccagccctgctcgtggtgaccg
aaggggacaacgccaccttcacctgcagcttctccaacacatcggag.............
..agcttcgtgctaaactggtaccgcatgagccccagcaaccagacggacaagctggccg
ccttccccgag............gaccgcagccagcccggccaggactgc..........
.....cgcttccgtgtcacacaactgcccaacgggcgtgacttccacatgagcgtggtca
gggcccggcgcaatgacagcggcacctacctctgtggggccatctccctggcc...ccca
aggcgcagatcaaagagagcctgcgggcagagctcagggtgacag
>U64863|PDCD1*05|Homo sapiens|F|EX3|
agagaagggcagaagtgcccacagcccaccccagcccctcacccaggccagccggccagt
tccaaaccctggtggttggtgtcgtgggcggcctgctgggcagcctggtgctgctagtct
gggtcctggccgtcatctgctcccgggccgcacgag
>U64863|PDCD1*05|Homo sapiens|F|EX4|
ggacaataggagccaggcgcaccggccagcccctg
>U64863|PDCD1*05|Homo sapiens|F|EX5|
aaggaggacccctcagccgtgcctgtgttctctgtggactatggggagctggatttccag
tggcgagagaagaccccggagccccccgtgccctgtgtccctgagcagacggagtatgcc
accattgtctttcctagcggaatgggcacctcatcccccgcccgcaggggctcagccgac
ggccctcggagtgcccagccactgaggcctgaggatggacactgctcttggcccctc