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IMGT reference sequences in FASTA format:

Nucleotide sequences with gaps

The FASTA header contains:
IMGT accession number | gene and allele name | species | functionality | exon name | domain name | domain type | alternative splicing (if it is) | partial (if it is) 
>M12728|CD3D*01|Mus musculus|F|EX1|
atggaacacagcgggattctggctagtctgatactgattgctgttctcccccaag
>M12729|CD3D*01|Mus musculus|F|EX2|[D]|C-LIKE|
..............................ggagccccttcaagatacaagtgaccgaat
atgag...............gacaaagtatttgtgacctgcaatacc.............
..........................agcgtcatgcatctagat................
..ggaacggtggaaggatggtttgca..................................
........aagaataaaacactcaacttgggcaaaggcgttctg......gacccacgag
ggatatatctgtgtaatgggacagagcag...............................
.................ctggcaaaggtggtgtcttctgtgcaagtccattaccgaa
>M12729|CD3D*01|Mus musculus|F|EX3|
tgtgccagaactgtgtggagctagactcgggcaccatggctggtgtcatcttcattgacc
tcatcgcaactctgctcctggctttgggcgtctactgctttgcaggacatgagaccggaa
ggccttctgggg
>M12729|CD3D*01|Mus musculus|F|EX4|
ctgctgaggttcaagcactgctgaagaatgagcagctgtatcag
>M12729|CD3D*01|Mus musculus|F|EX5|
cctcttcgagatcgtgaagatacccagtacagccgtcttggagggaactggccccggaac
aagaaatct
>BC062807|CD3D*02|Mus musculus|F|EX1|
atggaacacagcgggattctggctagtctgatactgattgctgttctcccccaag
>BC062807|CD3D*02|Mus musculus|F|EX2|[D]|C-LIKE|
..............................ggagccccttcaaggtacaagtgaccgaat
atgag...............gacaaagtatttgtgacctgcaatacc.............
..........................agcgtcatgcatctagat................
..ggaacggtggaaggatggtttgca..................................
........aagaataaaacactcaacttgggcaaaggcgttctg......gacccacgag
ggatatatctgtgtaatgggacagagcag............ctggcaaaggtggtgtctt
ctgtgcaagtccattaccgaa
>BC062807|CD3D*02|Mus musculus|F|EX3|
tgtgccagaactgtgtggagctagactcgggcaccatggctggtgtcatcttcattgacc
tcatcgcaactctgctcctggctttgggcgtctactgctttgcaggacatgagaccggaa
ggccttctgggg
>BC062807|CD3D*02|Mus musculus|F|EX4|
ctgctgaggttcaagcactgctgaagaatgagcagctgtatcag
>BC062807|CD3D*02|Mus musculus|F|EX5|
cctcttcgagatcgtgaagatacccagtacagccgtcttggagggaactggccccggaac
aagaaatcttaa
>AK042172|CD3D*03|Mus musculus|F|EX1|
atggaacacagcgggattctggctagtctgatactgattgctgttctcccccaag
>AK042172|CD3D*03|Mus musculus|F|EX2|[D]|C-LIKE|
..............................ggagccccttcaagatacaagtgaccgaat
atgag...............gacaaagtatttgtgacctgcaatacc.............
..........................agcgtcatgcatctagat................
..ggaacggtggaaggatggtttgca..................................
........aagaataaaacactcaacttgggcaaaggcgttctg......gacccacgag
ggatatatctgtgtaatgggacagagcag...............................
.................ctggcaaaggtggtgtcttctgtgcaagtccattaccgaa
>AK042172|CD3D*03|Mus musculus|F|EX3|
tgtgccagaactgtgtggagctagactcgggcaccatggctggtgtcatcttcattgacc
tcatcgcaactctgctcctggctttgggcgtctactgctttgcaggacatgagaccggaa
ggccttctgggg
>AK042172|CD3D*03|Mus musculus|F|EX4|
ctgctgaggttcaagcactgctgaagaatgagcagctgtatcag
>AK042172|CD3D*03|Mus musculus|F|EX5|
cctcttcgagatcgtgaagatacccagtacagccgtcttgaagggaactggccccggaac
aagaaatct
>AK153843|CD3D*04|Mus musculus|F|EX1|
atggaacacagcgggattctggctagtctgatactgattgctgttctcccccaag
>AK153843|CD3D*04|Mus musculus|F|EX2|[D]|C-LIKE|
..............................ggagccccttcaagatacaagtgaccgaat
atgag...............gacaaagtatttgtgacctgcaatacc.............
..........................agcgtcatgcatctagat................
..ggaacggtggaaggatggtttgca..................................
........aagaataaaacactcaacttgggcaaaggcgttctg......gacccacgag
ggatatatctgtgtaatgggacagagcag...............................
.................ctggcaaaggtggtgtcttctgtgcaagtccattaccgaa
>AK153843|CD3D*04|Mus musculus|F|EX3|
tgtgccagaactgtgtggagctagactcgggcaccatggctggtgtcatcttcattgacc
tcatcgcaactctgctcctggctttgggcgtctactgctttgcaggacatgagaccggaa
ggccttctgggg
>AK153843|CD3D*04|Mus musculus|F|EX4|
ctgctgaggttcaagcactgctgaagaatgagcagctgtatcag
>AK153843|CD3D*04|Mus musculus|F|EX5|
Cctcttcgagatcgtgaagatacccagtacagccgtcttggagggaactggccccggaac
aagaaacct