Other CD7 entries

IMGT RPI entry from gene to protein for Mus musculus CD7

Citing IMGT RPI entry for CD7

Duprat, E. et al. IMGT standardization for alleles and mutations of the V-LIKE-DOMAINs and C-LIKE-DOMAINs of the immunoglobulin superfamily, Recent Research Developments in Human Genetics, 2, 111-136 (2004) pdf with permission from Research Signpost

IMGT gene name and definition

Chromosomal localization

Gene exon/intron organization

CD7 Gene exon/intron organization

Legend:

Number of alleles: 3

IMGT reference alleles

Allele names Strain Haplotype Gene functionality IMGT reference sequences Partiality
Exons Accession numbers Molecule type
CD7*01 BALB/c d F EX1-4 D31956 [1] gDNA
CD7*02 129 bc F EX1-4 U23462 [2] gDNA (1)
CD7*03 FVB/N F EX1-4 BC024376 [3] cDNA (2)

IMGT reference sequences (in FASTA format) for the allele(s): CD7*01 to CD7*03

Other sequences from the literature

Allele names Strain Haplotype Gene functionality IMGT reference sequences
Exons Accession numbers Molecule type
CD7*01 F EX1-4 AL662887 (69891..72558) gDNA
C57BL/6J b F EX1-4 AK136444 cDNA
NOD F EX1-4 AK154339 cDNA
(C57BL/6 x CBA)F1 F EX1-4 D10329 cDNA
CD7*03 F EX1-4 CT010368 cDNA

Corresponding protein database accession numbers

Allele Name Accession numbers Number of amino acids Protein isoform
Nucleotide databases Protein databases
CD7*01 D31956 P50283 210 aa 1
NM_009854 NP_033984 210 aa 1
CD7*02 U23462 210 aa 1
CD7*03 BC024376 Q8R1M4 210 aa 1
IMGT notes:
  1. (1) In EX2 [D1] 150t>g; 50F>L, numbering according to IMGT unique numbering for V-DOMAIN and V-LIKE-DOMAIN.
  2. (2) In EX2 [D1] 28c>g; 10L>V, 31a>g, 32c>t; 11T>V and 54t>c, numbering according to IMGT unique numbering for V-DOMAIN and V-LIKE-DOMAIN. In EX4 33a>c; 11E>D
IMGT references:
  1. [1] Yoshikawa K.et al, Immunogenetics 37, 114-119 (1993). PMID:7678579
  2. [2] Lee D.M. et al, Immunogenetics 39, 289-290 (1994). PMID:7509775
  3. [3] Strausberg R.L et al, Proc. Natl. Acad. Sci. USA 99, 16899-16903 (2002). PMID:12477932

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

CD7*01: D31956(g)

Nucleotide sequence

1        atgactcagc aggcagtgct ggctttgctg cttacactgg ccggaatcct gcctggcccc

61       ctggatgccc aagacgtaca ccagtccccc cgactcacga ttgcctctga gggggattct

121      gtcaacatca cctgctctac aagagggcac ctggaaggga tcttaatgaa gaagatctgg

181      cctcaggctt acaatgtgat ttactttgaa gaccggcagg agcccacagt agacaggacc

241      ttctcaggcc gaattaattt ctctggttcc cagaagaacc tgaccatcac cataagctcc

301      ctccagctgg cagacactgg agactacacc tgcgaggctg tcaggaaagt cagtgcccgt

361      ggcttgttca ccacggttgt ggtgaaagaa aaatcatccc aagaagcata cagatcccag

421      gaacctctgc agacatcatt ttccttccca gctgccattg ctgtaggctt cttcttcacc

481      gggctgctcc ttggggtggt gtgcagcatg ctgaggaaga tacagatcaa gaaactgtgt

541      gcctcaggga ttaaggaatc tccgtgcgta gtgtatgaag acatgtccta cagcaaccgc

601      aagacgccat gcatccccaa ccagtaccag tga
Nucleotide sequence in FASTA format (without gaps) CD7*01

Amino acid sequence

1        MTQQAVLALL LTLAGILPGP LDAQDVHQSP RLTIASEGDS VNITCSTRGH LEGILMKKIW

61       PQAYNVIYFE DRQEPTVDRT FSGRINFSGS QKNLTITISS LQLADTGDYT CEAVRKVSAR

121      GLFTTVVVKE KSSQEAYRSQ EPLQTSFSFP AAIAVGFFFT GLLLGVVCSM LRKIQIKKLC

181      ASGIKESPCV VYEDMSYSNR KTPCIPNQYQ *
Amino acid sequence in FASTA format (without gap) CD7*01

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