IMGT Repertoire (IG and TR)

Potential germline repertoire: Chimpanzee (Pan troglodytes) TRAV and TRAJ genes on chromosome 15

Chimpanzee (Pan troglodytes) TRAV genes

The Chimpanzee (Pan troglodytes) TRA locus on chromosome 15 comprises 65 TRAV genes belonging to 49 TRAV subgroups:

• 41-44 FUNCTIONAL
• 1 ORF
• 21-23 PSEUDOGENE

IMGT group	IMGT set or subgroup (if any)	Functional	ORF	Pseudogene	Total
TRAV	TRAV1	2	0	0	2
	TRAV2	1	0	0	1
	TRAV3	1	0	0	1
	TRAV4	1	0	0	1
	TRAV5	(+1)*	0	(+1 (1:0))*	1
	TRAV6	1	0	0	1
	TRAV7	(+ 1)*	0	(+1 (0:1))*	1
	TRAV8	5	0	3(0:3)	8
	TRAV9	1 (+ 1)*	(+ 1)*	0	2
	TRAV10	1	0	0	1
	TRAV11	0	0	2 (0:2)	2
	TRAV12	3	0	0	3
	TRAV13	2	0	0	2
	TRAV14	1	0	1 (0:1)	2
	TRAV15	0	0	1 (0:1)	1
	TRAV16	1	0	0	1
	TRAV17	1	0	0	1
	TRAV18	1	0	0	1
	TRAV19	1	0	1 (1:0)	1
	TRAV20	1	0	0	1
	TRAV21	1	0	0	1
	TRAV22	1	0	0	1
	TRAV23	1	0	0	1
	TRAV24	1	0	0	1
	TRAV25	1	0	0	1
	TRAV26	2	0	0	2
	TRAV27	1	0	0	1
	TRAV28	0	0	1 (0:1)	1
	TRAV29	1	0	0	1
	TRAV30	1	0	0	1
	TRAV31	0	0	1 (1:0)	1
	TRAV32	0	0	1 (0:1)	1
	TRAV33	0	0	1 (0:1)	1
	TRAV34	1	0	0	1
	TRAV35	1	0	0	1
	TRAV36	1	0	0	1
	TRAV37	0	0	1 (0:1)	1
	TRAV38	2	0	0	2
	TRAV39	1	0	0	1
	TRAV40	1	0	0	1
	TRAV41	1	0	0	1
	TRAV46	0	0	1 (0:1)	1
	TRAVA	0	0	1 (0:1)	1
	TRAVB	0	0	1 (0:1)	1
	TRAVC	0	0	1 (1:0)	1
	TRAVD	0	0	1 (0:1)	1
	TRAVE	0	0	1 (0:1)	1
	TRAVF	0	0	1 (0:1)	1
	TRAVG	0	0	1 (0:1)	1
Total		41 (+ 3)	0 (+ 1)	21 (+ 2)	65

In the column 'Pseudogene', the number of pseudogenes with V-REGION in-frame and the number of pseudogenes with frameshift(s) are shown separated by two dots, between parentheses.
* An asterisk indicates that the following genes have alleles with different functionalities:
FUNCTIONAL or PSEUDOGENE (TRAV5 and TRAV7).
FUNCTIONAL or ORF (TRAV9-1).

The Chimpanzee (Pan troglodytes) TRAJ genes

The Chimpanzee (Pan troglodytes) TRA locus on chromosome 15 comprises 61 TRAJ genes:

• 49 FUNCTIONAL
• 9 ORF
• 3 PSEUDOGENE

IMGT group	IMGT set or subgroup (if any)	Functional	ORF	Pseudogene	Total
TRAJ	TRAJ1	0	1	0	1
	TRAJ2	0	1	0	1
	TRAJ3	1	0	0	1
	TRAJ4	1	0	0	1
	TRAJ5	1	0	0	1
	TRAJ6	1	0	0	1
	TRAJ7	1	0	0	1
	TRAJ8	1	0	0	1
	TRAJ9	1	0	0	1
	TRAJ10	1	0	0	1
	TRAJ11	1	0	0	1
	TRAJ12	1	0	0	1
	TRAJ13	0	1	0	1
	TRAJ14	1	0	0	1
	TRAJ15	1	0	0	1
	TRAJ16	0	1	0	1
	TRAJ17	1	0	0	1
	TRAJ18	1	0	0	1
	TRAJ19	0	1	0	1
	TRAJ20	1	0	0	1
	TRAJ21	1	0	0	1
	TRAJ22	1	0	0	1
	TRAJ23	1	0	0	1
	TRAJ24	1	0	0	1
	TRAJ25	1	0	0	1
	TRAJ26	1	0	0	1
	TRAJ27	1	0	0	1
	TRAJ28	1	0	0	1
	TRAJ29	1	0	0	1
	TRAJ30	1	0	0	1
	TRAJ31	1	0	0	1
	TRAJ32	1	0	0	1
	TRAJ33	1	0	0	1
	TRAJ34	1	0	0	1
	TRAJ35	0	1	0	1
	TRAJ36	1	0	0	1
	TRAJ37	1	0	0	1
	TRAJ38	1	0	0	1
	TRAJ39	1	0	0	1
	TRAJ40	1	0	0	1
	TRAJ41	1	0	0	1
	TRAJ42	1	0	0	1
	TRAJ43	1	0	0	1
	TRAJ44	1	0	0	1
	TRAJ45	1	0	0	1
	TRAJ46	1	0	0	1
	TRAJ47	1	0	0	1
	TRAJ48	1	0	0	1
	TRAJ49	1	0	0	1
	TRAJ50	1	0	0	1
	TRAJ51	0	0	1 (1:0)	1
	TRAJ52	0	1	0	1
	TRAJ53	1	0	0	1
	TRAJ54	1	0	0	1
	TRAJ55	0	0	1 (1:0)	1
	TRAJ56	1	0	0	1
	TRAJ57	1	0	0	1
	TRAJ58	1	0	0	1
	TRAJ59	0	1	0	1
	TRAJ60	0	0	1 (1:0)	1
	TRAJ61	0	1	0	1
Total		49	9	3	61

More information:
Gene table: Chimpanzee (Pan troglodytes) TRAV
Gene table: Chimpanzee (Pan troglodytes TRAJ
Gene table: Chimpanzee (Pan troglodytes TRAC
Locus description: Chimpanzee (Pan troglodytes TRA
Potential germline repertoire: Chimpanzee (Pan troglodytes TRD