IMGT Repertoire (MH)

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Other MHC entries

Mus musculus: H2-EA

IMGT MHC entry from gene to protein for Mus musculus MH2-EB

IMGT gene name and definition

IMGT gene name: Mus musculus MH2-EB
IMGT gene definition: histocompatibility 2, class II antigen E, beta 1

Chromosomal localization

Locus name:
Chromosome: 17
Chromosomal localization: 17B1; 17 18.66cM

Gene exon/intron organization

Legend:

Length of the exons and introns are in base pairs.
Colors are according to IMGT Color menu for regions and domains

Corresponding protein database accession numbers

Allele name	Accession numbers		Number of amino acids	Protein isoform
Allele name	Nucleotide databases	Protein databases	Number of amino acids	Protein isoform
MH2-EB*01	AK160485	Q31161, Q31171, Q61857, O78196	264aa
MH2-EB*02	X00623, X00701, X00702	P04230	264aa
MH2-EB*03	X52641	P18468	264aa
MH2-EB*04	X52642	P18469	264aa
MH2-EB*05	AK155968	P20040	264aa
MH2-EB*06	K00123, K00124, K00125, K00126	P01915	264aa
MH2-EB*07	M35677, M35678, M35679	Q31162	264aa
MH2-EB*09	U28489	Q31103	264aa
MH2-EB*10	U28490	Q31104	264aa
MH2-EB*11	M36939	Q31163	264aa
MH2-EB*12	M11355	P04231	232aa
MH2-EB*13	M12826	Q31185	238aa
MH2-EB*14	K01145	Q31164	237aa

IMGT notes:

(1) Many EMBL entries. For retrieval of EMBL entries, search EMBL server with EMBL accession numbers (tables above).

Genomic sequence

Coding region sequence

The coding region (CODING-REGION) sequence starts from INIT-CODON (or its encoded amino acid) to STOP-CODON (not included).
The nucleotide sequence is extracted from cDNA (c) sequences and/or is built by artificial exon joining from genomic DNA (g) sequences. The amino acid sequence is the translation of the nucleotide sequence.

MH2-EB*01: AK160485(g)

Nucleotide sequence

1        atggtgtggc tccccagagt tccctgtgtg gcagctgtga tcctgttgct gacagtgctg

61       agccctccag tggctttggt cagagactcc agaccatggt ttttggaata ctgtaaatct

121      gagtgtcatt tctacaacgg gacgcagcgc gtgcggcttc tggaaagata cttctacaac

181      ctggaggaga acctgcgctt cgacagcgac gtgggcgagt tccgcgcggt gaccgagctg

241      gggcggccag acgccgagaa ctggaacagc cagccggagt tcctggagca aaagcgggcc

301      gaggtggaca cggtgtgcag acacaactat gagatctcgg ataaattcct tgtgcggcgg

361      agagttgagc ctacggtgac tgtgtacccc acaaagacac agcccctgga acaccacaac

421      ctcctggtct gctctgtgag tgacttctac cctggcaaca ttgaagtcag atggttccgg

481      aatggcaagg aggagaaaac aggaattgtg tccacgggcc tggtccgaaa tggagactgg

541      accttccaga cactggtgat gctggagacg gttcctcaga gtggagaggt ttacacctgc

601      caggtggagc atcccagcct gaccgaccct gtcacggtcg agtggaaagc acaatccaca

661      tctgcacaga acaagatgtt gagtggagtt gggggcttcg tgctgggcct gctcttcctg

721      ggagcggggc tgttcatcta cttcaggaac cagaaaggac agtctggact tcagccaaca

781      ggactcctga gctga

Nucleotide sequence in FASTA format (without gaps) MH2-EB*01

Amino acid sequence

1        MVWLPRVPCV AAVILLLTVL SPPVALVRDS RPWFLEYCKS ECHFYNGTQR VRLLERYFYN

61       LEENLRFDSD VGEFRAVTEL GRPDAENWNS QPEFLEQKRA EVDTVCRHNY EISDKFLVRR

121      RVEPTVTVYP TKTQPLEHHN LLVCSVSDFY PGNIEVRWFR NGKEEKTGIV STGLVRNGDW

181      TFQTLVMLET VPQSGEVYTC QVEHPSLTDP VTVEWKAQST SAQNKMLSGV GGFVLGLLFL

241      GAGLFIYFRN QKGQSGLQPT GLLS*

Amino acid sequence in FASTA format (without gap) MH2-EB*01

Legend:

Colors are according to IMGT Color menu for regions and domains
Nucleotide and amino acid letters (in bold) in purple, green or blue are according to IMGT Color menu for splicing types.

IMGT links

IMGT Repertoire

Chromosomal localization: Vertebrate species (table)
Protein displays (MHC): G-DOMAIN, C-LIKE-DOMAIN
Alignment of alleles:
Strand and loop lengths (MHC): G-DOMAIN, C-LIKE-DOMAIN
Collier de perles (MHC): G-DOMAIN, C-LIKE-DOMAIN

IMGT databases

IMGT/3Dstructure-DB: 1fne, 1fng, 1kt2, 1r5v, 1r5w

External links

Nomenclature

MGI: 95901

Genome databases

Entrez Gene: 14969

Sequence databases

EMBL: many entries (tables above ) (1)
GenBank:
DDBJ:
Swiss-Prot: P04230, P18468, P18469, P20040, P01915, P04231
TrEMBL: Q31161, Q31171, Q61857, O78196, Q31162, Q31103, Q31104, Q31163, Q31185, Q31164
NCBI:

Structure

PDB: 1FNE, 1FNG, 1KT2, 1R5V, 1R5W