IMGT Repertoire (RPI)
Alignment of alleles: Mouse IGLL1
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Accession Allele EXON 1
number name
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20
M K L R V G Q T L G T I P R Q C E V L L
X04769 , IGLL1*01 (EX1) ATG AAG CTC AGA GTA GGA CAG ACT CTG GGC ACT ATC CCC AGG CAG TGT GAA GTT CTC CTC
M30387 , IGLL1*02 (cDNA)(1)
21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40
L L L L L G L V D G V H H I L S P S S A
X04769 , IGLL1*01 (EX1) CTG CTG CTG CTG TTG GGT CTA GTG GAT GGT GTC CAC CAC ATA CTT TCC CCA AGC TCA GCA
#
M30387 , IGLL1*02 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---C---
41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60
E R S R A V G P G A S V G S N R P S L W
X04769 , IGLL1*01 (EX1) GAA AGG AGC AGA GCT GTG GGC CCT GGA GCT TCA GTG GGA AGC AAC AGG CCT AGC CTA TGG
T # #
M30387 , IGLL1*02 (cDNA) --- --- -CG --- --- --- --- --- --- --- --- --- --- -.- --- --- --- --- .-- ---
61 62 63 64
A L P G
X04769 , IGLL1*01 (EX1) (2) GCC CTT CCC GGC AG
#
M30387 , IGLL1*02 (cDNA) (1) .-- --- --- --- --
/
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Accession Allele EXON 2
number name
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19
R L L F Q I I P R G A G P R C S P H R L
X04748 , IGLL1*01 (EX2) G CTC CTG TTC CAG ATC ATC CCA CGG GGA GCA GGT CCC AGG TGC TCG CCC CAT AGG CTT
F Y
M30387 , IGLL1*02 (cDNA) (1) - --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- TTT T-- --- ---
20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38
P S K P Q F W Y V F G G G T Q L T I L
X04748 , IGLL1*01 (EX2) CCA TCT AAG CCC CAG TTT TGG TAT GTC TTT GGT GGT GGG ACC CAG CTC ACA ATC CTA G
M30387 , IGLL1*02 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- -
/
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Accession Allele EXON 3
number name
___________________________________________________________________________________________________________________________________
1.5 1.4 1.3 1.2 1.1 1 2 3 4 5 6 7 8 9 10 11
G Q P K S D P L V T L F L P S L
X04770 , IGLL1*01 (EX3) GT CAG CCC AAG TCT GAC CCC TTG GTC ACT CTG TTC CTG CCT TCC TTA
M30387 , IGLL1*02 (cDNA) (1) -- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
_____AB_____ ________
15.1 15.3
12 13 14 15 15.2 16 17 18 19 20 21 22 23 24 25 26 27 28
K N L Q P T R P H V V C L V S E F
X04770 , IGLL1*01 (EX3) AAG AAT CTT CAG ... ... ... CCA ACA AGG CCA CAC GTA GTG TGT TTG GTG AGC GAA TTC
Q L
M30387 , IGLL1*02 (cDNA) --- --- --- --- ... ... ... --- --- --- --- --G C-- --- --- --- --- --- --- ---
_________BC_____________________ _________CD_________
45.1 45.3 45.5
29 30 31 32 33 34 35 36 39 40 41 42 43 44 45 45.2 45.4
Y P G T L V V D W K V D G V P V T Q
X04770 , IGLL1*01 (EX3) TAC CCA ... ... GGT ACT TTG GTG GTG GAC TGG AAG GTA GAT GGG GTC CCT GTC ACT CAG
M30387 , IGLL1*02 (cDNA) --- --T ... ... --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ---
________ ___________________DE___________________
45.7 84.1 84.3 84.5 84.7 85.6
45.6 77 78 79 80 81 82 83 84 84.2 84.4 84.6 85.7 85.5
G V E T T Q P S K Q T N
X04770 , IGLL1*01 (EX3) ... ... GGT GTA GAG ACA ACC CAA CCC TCC AAA CAG ACC AAC ... ... ... ... ... ...
M30387 , IGLL1*02 (cDNA) ... ... --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... ... ...
________________ ___EF___
85.4 85.2 96.1
85.3 85.1 85 86 87 88 89 90 91 92 93 94 95 96 96.2 97 98
N K Y M V S S Y L T L I S D Q W M P
X04770 , IGLL1*01 (EX3) AAC AAA TAC ATG GTC AGC AGC TAC CTG ACA CTG ATA TCT GAC CAG TGG ... ... ATG CCT
M30387 , IGLL1*02 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... --- ---
_______________________FG___________________________
99 100 101 102 103 104 105 106 107 108 109 110 111 112 113 114 115 116 117 118
H S R Y S C R V T H E G N T V E
X04770 , IGLL1*01 (EX3) CAC AGT AGA TAC AGC TGC CGG GTC ACT CAT GAA GGA AAC ... ... ... ... ACT GTG GAG
M30387 , IGLL1*02 (cDNA) --- --- --- --- --- --- --- --- --- --- --- --- --- ... ... ... ... --- --- ---
119 120 121 122 123 124 125 126 127 128
K S V S P A E C S *
X04770 , IGLL1*01 (EX3) AAG AGT GTG TCA CCT GCT GAG TGT TCT
M30387 , IGLL1*02 (cDNA) --- --- --- --- --- --- --- --- ---
Legend:
- When several alleles are shown, the nucleotide mutations and amino acid changes for a given codon are indicated in red letters.
- Dashes indicate identical nucleotides. Dots indicate gaps by comparison to the longest sequence.
- Blanks indicate partial sequences (blanks at the 5' and/or 3' end).
- Exon names are shown between parentheses on the first line.
- Cysteine involved in the disulfide bridge are shown in purple.
- STOP-CODON is indicated by an asterisk.
| (1) | Sequence is partial in 5' side. One INSERTION of one nucleotide (c between codons 39 and 40) and three DELETIONs of one nucleotide (codons 54, 59, 61), leading to frameshifts. |
| (2) | The splicing type between EX1 and EX2 is codon_start 2, instead of the usual splicing type (codon_start 3) for IG and TR. |
See also:
- IMGT Repertoire:
- IMGT Scientific chart:
- IMGT Index:
- IMGT Education (FR):
- Tools:
Created: 24/04/2003
Last updated: Friday, 22-Sep-2023 18:32:06 CEST
Author: Dominique Scaviner
Editor: Elodie Gemrot
Last updated: Friday, 22-Sep-2023 18:32:06 CEST
Author: Dominique Scaviner
Editor: Elodie Gemrot
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