IMGT Scientific chart

IMGT-ONTOLOGY and IMGT Scientific chart rules and examples in ImmunoGrid

Marie-Paule Lefranc, Véronique Giudicelli, François Ehrenmann and Patrice Duroux
CNRS, IMGT, Montpellier

IMGT-ONTOLOGY		IMGT Scientific chart rules	ImmunoGrid [1, 2] deliverables	Examples in ImmunoGrid
AXIOMS	IDENTIFICATION	Keywords	D1.2 Scientific chart rules and ontologies report	IG, TR, MHC and RPI nucleotide and amino acid sequence, and 3D structure identification
	DESCRIPTION	Labels
	CLASSIFICATION	Nomenclature
				IG, TR, MHC and RPI nucleotide and amino acid sequence, and 3D structure description
				IG, TR, MHC and RPI gene and allele names
	NUMEROTATION	Unique numbering	D1.3 IMGT unique numbering and controlled vocabularies report	IMGT Colliers de Perles for V-DOMAIN and V-LIKE-DOMAIN
				IMGT Colliers de Perles for C-DOMAIN and C-LIKE-DOMAIN
				IMGT Colliers de Perles for G-DOMAIN and G-LIKE-DOMAIN
CONCEPT	Interaction	pMHC contact sites	D1.4 New concepts of "INTERACTION" and "LOCALIZATION" and deduced IMGT Scientific chart rules report	pMHC interactions
		IMGT Residue@Position		pMHC interactions
				TR/pMHC interactions
				IG/antigen interactions
				IgSF and MhcSF domain interactions

The corresponding controlled vocabulary and rules are available in the IMGT Scientific chart at http://www.imgt.org

[1] Pappalardo, F. et al. Brief. Bioinform., 10, 330-340 (2009). PMID: 19383844 LIGM:352

[2] Halling-Brown, M. et al. Philos. Transact. A Math. Phys. Eng. Sci., 368(1920), 2799-2815 (2010). PMID: 20439274 LIGM:364